Publications

  • Livia Merendino, Florence Courtois, Björn Grübler, Olivier Bastien, Vera Straetmanns, Fabien Chevalier, Silva Lerbs-Mache, Claire Lurin, Thomas Pfannschmidt. 2020. Philosophical Transactions of the Royal Society B, in press (2020) ODI 10.1098/rstb.2019.0567
  • Natali Romero-Barrios, Dario Monachello, Ulla Dolde, Aloysius Wong, Helene San Clemente, Anne Cayrel, Alexander Johnson, Claire Lurin, Grégory Vert. 2020 Advanced Cataloging of Lysine-63 Polyubiquitin Networks by Genomic, Interactome, and Sensor-based Proteomic Analyses. The Plant Cell. DOI: https://doi.org/10.1105/tpc.19.00568
  • Castandet B, Germain A, Hotto AM, Stern DB. Systematic sequencing of chloroplast transcript termini from Arabidopsis thaliana reveals >200 transcription initiation sites and the extensive imprints of RNA-binding proteins and secondary structures. Nucleic Acids Res. 2019 Dec 16;47(22):11889-11905
  • Manuel González-Fuente, Sébastien Carrère, Dario Monachello, Benjamin G. Marsella, Anne-Claire Cazalé, Claudine Zischek,NathalieRezé,Ludovic Cottret, Shahid M. Mukhtar, ClaireLurin, Laurent D. Noël and Nemo Peeters 2019  .EffectorK, a comprehensive resource to mine for pathogen effector targets in the Arabidopsis proteome. Preprint Biorxiv https://www.biorxiv.org/content/10.1101/2019.12.16.878074v2
  • Lallemand F, Logacheva M, Le Clainche I, Bérard A, Zheleznaia E, May M, Jakalski M, Delannoy E, Le Paslier MC, Selosse MA. Thirteen New Plastid Genomes from Mixotrophic and Autotrophic Species Provide Insights into Heterotrophy Evolution in Neottieae Orchids. Genome Biol Evol. 2019 Sep 1;11(9):2457-2467. doi: 10.1093/gbe/evz170.
  • Cuello C, Baldy A, Brunaud V, Joets J, Delannoy E, Jacquemot MP, Botran L, Griveau Y, Guichard C, Soubigou-Taconnat L, Martin-Magniette ML, Leroy P, Méchin V, Reymond M, Coursol S. A systems biology approach uncovers a gene co-expression network associated with cell wall degradability in maize. PLoS One. 2019 Dec 31;14(12):e0227011. doi: 10.1371/journal.pone.0227011. eCollection 2019.
  • Niazi AK, Delannoy E, Iqbal RK, Mileshina D, Val R, Gabryelska M, Wyszko E, Soubigou-Taconnat L, Szymanski M, Barciszewski J, Weber-Lotfi F, Gualberto JM, Dietrich A. Mitochondrial Transcriptome Control and Intercompartment Cross-Talk During Plant Development. Cells. 2019 Jun 13;8(6). pii: E583. doi: 10.3390/cells8060583.
  • Lallemand F, Martin-Magniette ML, Gilard F, Gakière B, Launay-Avon A, Delannoy E, Selosse MA. In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi. Plant J. 2019 Feb 8. doi: 10.1111/tpj.14276
  • Damerval C, Citerne H, Conde E Silva N, Deveaux Y, Delannoy E, Joets J, Simonnet F, Staedler Y, Schönenberger J, Yansouni J, Le Guilloux M, Sauquet H, Nadot S. Unraveling the Developmental and Genetic Mechanisms Underpinning Floral Architecture in Proteaceae. Front Plant Sci. 2019 Jan 25;10:18 doi: 10.3389/fpls.2019.00018
  • Majeran W, Le Caer JP, Ponnala L, Meinnel T, Giglione C. (2018). Targeted Profiling of Arabidopsis thaliana Subproteomes Illuminates Co- and Posttranslationally N-Terminal Myristoylated Proteins. Plant Cell. 30(3):543-562. doi: 10.1105/tpc.17.00523.
  • Michel EJS, Hotto AM, Strickler SR, Stern DB, Castandet B. (2018) A Guide to the Chloroplast Transcriptome Analysis Using RNA-Seq. Methods Mol Biol. 1829:295-313. doi: 10.1007/978-1-4939-8654-5_20.
  • Courtois F, Merendino L. (2018) Mapping Plastid Transcript Population by Circular Reverse Transcription Polymerase Chain Reaction. Methods Mol Biol. 1829:273-278. doi: 10.1007/978-1-4939-8654-5_18.
  • Malbert B, Rigaill G, Brunaud V, Lurin C, Delannoy E. (2018). Bioinformatic Analysis of Chloroplast Gene Expression and RNA Post-transcriptional Maturations Using RNA Sequencing. Methods Mol Biol. 1829:279-294. doi: 10.1007/978-1-4939-8654-5_19.
  • Sakai K, Taconnat L, Borrega N, Yansouni J, Brunaud V, Paysant-Le Roux C, Delannoy E, Martin Magniette ML, Lepiniec L, Faure JD, Balzergue S, Dubreucq B. (2018) Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo. Plant Methods 14: 10. doi: 10.1186/s13007-018-0275-x.
  • Guillaumot D, Lopez-Obando M, Baudry, K, Avon A, Rigaill G, Falcon de Longevialle A, Broche B, Takenaka M, Berthomé R, De Jaeger G, Delannoy E, Lurin C. (2017). Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria. Proc Natl Acad Sci U S A. 114(33):8877-8882. doi: 10.1073/pnas.1705780114.
  • Rigaill G., Balzergue S., Brunaud V., Blondet E., Rau A., Rogier O., Caius J., Maugis-Rabusseau C., Soubigou-Taconnat L., Aubourg S., Lurin C., Martin-Magniette M-L., Delannoy E. (2016). Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis. Brief Bioinform. 1-12. doi:10.1093/bib/bbw092.
  • Zaag R, Tamby JP, Guichard C, Tariq Z, Rigaill G, Delannoy E, Renou JP, Balzergue S, Mary-Huard T, Aubourg S, Martin-Magniette ML, Brunaud V. (2015) GEM2Net: From gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. Nucleic Acids Res 43: D1010–D1017. doi: 10.1093/nar/gku1155.
  • Boussardon C, Avon A, Kindgren P, Bond CS, Challenor M, Lurin C, Small I. (2014) The cytidine deaminase signature HxE(x)n CxxC of DYW1 binds zinc and is necessary for RNA editing of ndhD-1. New Phytol, 203(4):1090-1095. doi: 10.1111/nph.12928.
  • Braun P, Aubourg S, Van Leene J, De Jaeger G, Lurin C*. (2013) Plant protein interactomes. Annu Rev Plant Biol 64:161-187. (*invited) doi: 10.1146/annurev-arplant-050312-120140.
  • Colcombet J, Lopez-Obando M, Heurtevin L, Bernard C, Martin K, Berthomé R, Lurin C. (2013) Systematic study of subcellular localization of Arabidopsis PPR proteins confirms a massive targeting to organelles. RNA Biol. 10(9):1557-75. doi: 10.4161/rna.26128.

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  Livia Merendino, Florence Courtois, Björn Grübler, Olivier Bastien, Vera Straetmanns, Fabien Chevalier, Silva Lerbs-Mache, Claire Lurin, Thomas Pfannschmidt. 2020. Philosophical Transactions of the Royal Society B, in press (2020) ODI 10.1098/rstb.2019.0567

  Castandet B, Germain A, Hotto AM, Stern DB. Systematic sequencing of chloroplast transcript termini from Arabidopsis thaliana reveals >200 transcription initiation sites and the extensive imprints of RNA-binding proteins and secondary structures. Nucleic Acids Res. 2019 Dec 16;47(22):11889-11905