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The IPS2 transcriptOmic Platform:  Design upstream to analyse downstream

           Equipment   -//-  Availables applications  -//-  Agreement   -//-  Tarification

The POPS transcriptomic platform (iPS2 Transcriptomics Platform) carries out transcriptome study projects in collaboration with national and international research teams. It offers expertise in the analysis of comparative gene expression through the use of high throughput RNA sequencing, or RNA-seq. This offer is completed by the bio-informatic and statistical analysis of raw data allowing the quantitative analysis of the transcriptome.

All the transcription experiments analysed are accessible through 2 databases:

• CATdb   is our laboratory management system developed by the Genomic Networks team. This database guarantees traceability, secure storage, access to experimental design and statistical analysis.

• GEO (NCBI) is an international repository essential for the publication of experiments, the export of data from CATdb to GEO is processed automatically.
  

   

The POPS platform is specialized in plants. To date we have worked on about thirty different species.

The platform has been labeled IBiSA  since 2008 and "National Strategic Platform" by the National Commission of Collective Tools of INRA since 2008 also, it’s also ISO9001  certified since 2012.