Publications

Scientific articles

  • Shifting the limits in wheat research and breeding using a fully annotated reference genome.  International Wheat Genome Sequencing Consortium (IWGSC Science. 2018 Aug 17;361(6403). pii: eaar7191. doi: 10.1126/science.aar7191. Epub 2018 Aug 16.  PMID:     30115783
  • The transcriptional landscape of polyploid wheat.  Ramírez-González RH, Borrill P, Lang D, Harrington SA, Brinton J, Venturini L, Davey M, Jacobs J, van Ex F, Pasha A, Khedikar Y, Robinson SJ, Cory AT, Florio T, Concia L, Juery C, Schoonbeek H, Steuernagel B, Xiang D, Ridout CJ, Chalhoub B, Mayer KFX, Benhamed M, Latrasse D, Bendahmane A; International Wheat Genome Sequencing Consortium, Wulff BBH, Appels R, Tiwari V, Datla R, Choulet F, Pozniak CJ, Provart NJ, Sharpe AG, Paux E, Spannagl M, Bräutigam A, Uauy C.  Science. 2018 Aug 17;361(6403). pii: eaar6089. doi: 10.1126/science.aar6089.
  • An improved assembly and annotation of the melon (Cucumis melo L.) reference genome.  Ruggieri V, Alexiou KG, Morata J, Argyris J, Pujol M, Yano R, Nonaka S, Ezura H, Latrasse D, Boualem A, Benhamed M, Bendahmane A, Cigliano RA, Sanseverino W, Puigdomènech P, Casacuberta JM, Garcia-Mas J.  Sci Rep. 2018 May 24;8(1):8088. doi: 10.1038/s41598-018-26416-2.
  • Raymond O, Gouzy J, Just, Badouin H, Verdenaud M, Lemainque A, Vergne P, Moja S, Choisne N, Pont C, Carrère S, Caissard JC, Couloux A, Cottret L, Aury JM, Szecsi J, Latrasse D, Madoui MA, François L, Fu XP, Yang SH, Dubois A, Piola A, Larrieu A, Perez M, Labadie K, Perrier L, Govetto B, Labrousse Y, Villand P, Bardoux C, Boltz V, Lopez- Roques C, Heitzler P, Vernoux T, Vandenbussche M, Quesneville H, Boualem A, Bendahmane A, Liu C, Le Bris M, Salse J, Baudino S, Benhamed M, Wincker P, Bendahmane M. (2018) The Rosa genome provides new insights into the domestication of modern roses. Nature Genetics, 2018, DOI: 10.1038/s41588-018- 0110-3.
  • Scutenaire J, Deragon JM, Jean V, Benhamed M, Raynaud C, Favory JJ, Merret R, Bousquet-Antonelli C. The YTH Domain Protein ECT2 is an m6A Reader Required for Normal Trichome Branching in Arabidopsis (2018). Plant Cell. doi: 10.1105/tpc.17.00854. [Epub ahead of print].
  • De Zélicourt A, Synek L, Saad MM, Alzubaidy H, Jalal R, Xie Y, Andrés-Barrao C, Rolli E, Guerard F, Mariappan KG, Daur I, Colcombet J, Benhamed M, Depaepe T, Van Der Straeten D, Hirt H. (2018) Ethylene induced plant stress tolerance by Enterobacter sp. SA187 is mediated by 2-keto-4-methylthiobutyric acid production. PLoS Genet. 19;14(3):e1007273. doi: 10.1371/journal.pgen.1007273.
  • Ling Y, Serrano N, Gao G, Atia M, Mokhtar M, Woo YH, Bazin J, Veluchamy A, Benhamed M, Crespi M, Gehring C, Reddy ASN, Mahfouz MM. (2018) Thermopriming Triggers Splicing Memory in Arabidopsis. J Exp Bot. doi: 10.1093/jxb/ery062. [Epub ahead of print].
  • Bollier N, Sicard A, Leblond J, Latrasse D, Gonzalez N, Gévaudant F, Benhamed M, Raynaud C, Lenhard M, Chevalier C, Hernould M, Delmas F. (2018) At-MINI ZINC FINGER2 and Sl-INHIBITOR OF MERISTEM ACTIVITY, a Conserved Missing Link in the Regulation of Floral Meristem Termination in Arabidopsis and Tomato. Plant Cell. 30(1):83-100. doi: 10.1105/tpc.17.00653.
  • Li H, Torres-Garcia J, Latrasse D, Benhamed M, Schilderink S, Zhou W, Kulikova O, Hirt H, Bisseling T. (2017) Plant-Specific Histone Deacetylases HDT1/2 Regulate GIBBERELLIN 2-OXIDASE2 Expression to Control Arabidopsis Root Meristem Cell Number. Plant Cell. 29(9):2183-2196. doi: 10.1105/tpc.17.00366.
  • Blomme J, Van Aken O, Van Leene J, Jégu T, De Rycke RM, De Bruyne M, Vercruysse J, Nolf J, Van Daele T, De Milde L, Vermeersch M, Colas des Francs-Small C, De Jaeger G, Benhamed M, Millar AH, Inzé D, Gonzalez N. (2017) The Mitochondrial DNA (mtDNA)-Associated Protein SWIB5 Influences mtDNA Architecture and Homologous Recombination.  Plant Cell. 29(5):1137-1156 doi: 10.1105/tpc.16.00899.
  • Nagymihály M, Veluchamy A, Györgypál Z, Ariel F, Jégu T, Benhamed M, Szecs A, Kereszt A, Mergaert P, Kondorosi É. (2017) Ploidy-dependent changes in the epigenome of symbiotic cells correlate with specific patterns of gene expression.  Proc Natl Acad Sci U S A. 114(17):4543-4548 doi: 10.1073/pnas.1704211114.
  • AlShareef S, Ling Y, Butt H, Mariappan KG, Benhamed M, Mahfouz MM. (2017) Herboxidiene triggers splicing repression and abiotic stress responses in plants. BMC Genomics. 27;18(1):260. doi: 10.1186/s12864-017-3656-z..
  • Duc C, Benoit M, Détourné G, Simon L, Poulet A, Jung M, Veluchamy A, Latrasse D, Le Goff S, Cotterell S, Tatout C, Benhamed M, Probst AV. (2017) Arabidopsis ATRX Modulates H3.3 Occupancy and Fine-Tunes Gene Expression. Plant Cell. 29(7):1773-1793. doi: 10.1105/tpc.16.00877.
  • Latrasse D, Jégu T, Li H, de Zelicourt A, Raynaud C, Legras S, Gust A, Samajova O, Veluchamy A, Rayapuram N, Ramirez-Prado JS, Kulikova O, Colcombet J, Bigeard J, Genot B, Bisseling T, Benhamed M, Hirt H. (2017) MAPK-triggered chromatin reprogramming by histone deacetylase in plant innate immunity. Genome Biol. 6;18(1):131.
  • Jégu T, VeluchamyA, Ramirez-Prado JS, Rizzi-PailletC, Lhomme A, Latrasse D, Vicaire S, LegrasS, JostB, RougéeM, BarnecheF, BergouniouxC, CrespiM, HirtH, Raynaud C Benhamed M (2017) The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility Genome Biology 15;18(1):114.
  • Latrasse D, Rodriguez-Granados NY, Veluchamy A, Gayathri Mariappan K, Bevilacqua C, Crapart N, Camps C, Sommard V, Raynaud C, Dogimont C, Boualem A, Benhamed M, Bendahmane A (2017) The quest for epigenetic regulation underlying unisexual flower development in Cucumis melo Epigenetics and Chromatin Jun 6;10:22..
  • Pedroza-García JA, Mazubert C, Del Olmo I, Bourge M, Domenichini S, Bounon R, Tariq Z, Delannoy E, Piñeiro M, Jarillo JA, Bergounioux C, Benhamed M, Raynaud C. (2017) Function of the Plant DNA Polymerase Epsilon in Replicative Stress Sensing, a Genetic Analysis. Plant Physiol. 173(3):1735-1749.
  • Veluchamy A, Jégu T, Ariel F, Latrasse D, Mariappan KG, Kim SK, Crespi M, Hirt H, Bergounioux C, Raynaud C, Benhamed M. LHP1 Regulates H3K27me3 Spreading and Shapes the Three-Dimensional Conformation of the Arabidopsis Genome. PLoS One. 2016; 11(7):e0158936.
  • Del Olmo I, López JA, Vázquez J, Raynaud C, Piñeiro M, Jarillo JA. (2016) Arabidopsis DNA polymerase ϵ recruits components of Polycomb repressor complex to mediate epigenetic gene silencing. Nucleic Acids Res. 44(12):5597-614.
  • Lytvyn DIRaynaud C, Yemets AI, Bergounioux, Cand Blume YB (2016) Involvement of Inositol Biosynthesis and Nitric Oxide in the Mediation of UV-B Induced Oxidative Stress Front. Plant Sci. 7:430.
  • Pedroza-Garcia JA, Domenichini S, Mazubert C, Bourge M, White C, Hudik E, Bounon R, Tariq Z, Delannoy E, Del Olmo I, Piñeiro M, Jarillo JA, Bergounioux C, Benhamed M, Raynaud C. (2016) Role of the Polymerase ϵ sub-unit DPB2 in DNA replication, cell cycle regulation and DNA damage response in Arabidopsis. Nucleic Acids Res. 44(15):7251-66. Recommended by the F1000.
  • Bruggeman Q, Mazubert C, Prunier F, Lugan R, Chan KX, Phua SY, Pogson BJ, Krieger-Liszkay A, Delarue M, Benhamed M, Bergounioux C, Raynaud C. (2016) Chloroplast Activity and 3'phosphadenosine 5'phosphate Signaling Regulate Programmed Cell Death in Arabidopsis. Plant Physiol. 170(3):1745-56.
  • Chen SF, Yin DM, Liang K, Raynaud C, Ni DA. (2015)  Arabidopsis MCM2 is responsible for reduction in cell division induced by loss of function of the alpha subunit of GTP-binding protein Acta Physiol. Plant. 37(11): UNSP 241.
  • Jégu T, Domenichini S, Blein T, Ariel F, Christ A, Kim SK, Crespi M, Boutet-Mercey S, Mouille G, Bourge M, Hirt H, Bergounioux C, Raynaud C, Benhamed M. (2015) A SWI/SNF Chromatin Remodelling Protein Controls Cytokinin Production through the Regulation of Chromatin Architecture. PLoS One. 10(10):e0138276.
  • Bruggeman Q, Prunier F, Mazubert C, de Bont L, Garmier M, Lugan R, Benhamed M, Bergounioux C, Raynaud C, Delarue M. (2015) Involvement of Arabidopsis Hexokinase1 in Cell Death Mediated by Myo-Inositol Accumulation. Plant Cell. 27(6):1801-14.
  • Vercruyssen L, Verkest A, Gonzalez N, Heyndrickx KS, Eeckhout D, Han SK, Jégu T, Archacki R, Van Leene J, Andriankaja M, De Bodt S, Abeel T, Coppens F, Dhondt S, De Milde L, Vermeersch M, Maleux K, Gevaert K, Jerzmanowski A, Benhamed M, Wagner D, Vandepoele K, De Jaeger G, Inzé D. (2014) ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development. Plant Cell. 26(1):210-29.
  • Ariel F, Jegu T, Latrasse D, Romero-Barrios N, Christ A, Benhamed M, Crespi M. (2014) Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop. Mol Cell. 55(3):383-96.
  • Hudik E, Yoshioka Y, Domenichini S, Bourge M, Soubigout-Taconnat L, Mazubert C, Yi D, Bujaldon S, Hayashi H, De Veylder L, Bergounioux C, Benhamed M, Raynaud C. (2014) Chloroplast Dysfunction Causes Multiple Defects in Cell Cycle Progression in the Arabidopsis crumpled leaf Mutant. Plant Physiol. 166(1):152-67.
  • Bruggeman Q, Garmier M, de Bont L, Soubigou-Taconnat L, Mazubert C, Benhamed M, Raynaud C, Bergounioux C, Delarue M. (2014) The Polyadenylation Factor Subunit CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR30: A Key Factor of Programmed Cell Death and a Regulator of Immunity in Arabidopsis. Plant Physiol. 165(2):732-746.
  • Jégu T, Latrasse D, Ariel F, Delarue M, Domenichini S, Crespi M, Bergounioux C, Raynaud C and Benhamed M (2014) The SWI/SNF chromatin remodelling protein AtBAF60 directly controls the formation of a gene loop at the FLC locus in Arabidopsis. Plant Cell. 26(2):538-51.
  • Neyret-Kahn H, Benhamed M, Ye T, Le Gras S, Cossec JC, Lapaquette P, Bischof O, Ouspenskaia M, Dasso M, Seeler J, Davidson I, Dejean A. (2013) Sumoylation at chromatin governs coordinated repression of a transcriptional program essential for cell growth and proliferation. Genome Res. 23(10):1563-79. doi: 10.1101/gr.154872.113.
  • Jégu T, Latrasse D, Delarue M, Mazubert C, Bourge M, Hudik E, Blanchet S, Soler MN, Charon C, De Veylder L, Raynaud C, Bergounioux C, Benhamed M. (2013) Multiple functions of Kip-related protein5 connect endoreduplication and cell elongation. Plant Physiol. 161(4):1694-705. doi: 10.1104/pp.112.212357.
  • Latrasse D, Jégu T, Meng PH, Mazubert C, Hudik E, Delarue M, Charon C, Crespi M, Hirt H, Raynaud C, Bergounioux C, Benhamed M. (2013) Dual function of MIPS1 as a metabolic enzyme and transcriptional regulator. Nucleic Acids Res. 41(5):2907-17.

 

 Review articles

  • Plant Immunity: From Signaling to Epigenetic Control of Defense.  Ramirez-Prado JS, Abulfaraj AA, Rayapuram N, Benhamed M, Hirt H.  Trends Plant Sci. 2018 Sep;23(9):833-844. doi: 10.1016/j.tplants.2018.06.004. Epub 2018 Jun 30.
  • Ramirez-Prado JS, Piquerez SJM, Bendahmane A, Hirt H, Raynaud C, Benhamed M. (2018) Modify the Histone to Win the Battle: Chromatin Dynamics in Plant-Pathogen Interactions. Front Plant Sci. 19;9:355. doi: 10.3389/fpls.2018.00355. eCollection 2018.
  • Romero-Barrios N, Legascue MF, Benhamed M, Ariel F, Crespi M. (2018) Splicing regulation by long noncoding RNAs. Nucleic Acids Res. 16;46(5):2169-2184.
  • Pedroza-Garcia JA, Domenichini S, Bergounioux C, Benhamed M and Raynaud C. (2016) Chloroplasts around the cell cycle. Invited review in Curr. Opin. Plant Biol. 34:107-113.
  • Ramirez-Prado JS, Rodriguez-Granados NY, Ariel F, Raynaud C, Benhamed M. (2016) Chromatin architecture: A new dimension in the dynamic control of gene expression. Plant Signal Behav. 2;11(10):e1232224.
  • Latrasse D, Benhamed M, Bergounioux C, Raynaud C, Delarue M. (2016) Plant programmed cell death from a chromatin point of view. J Exp Bot. 67(20):5887-5900.
  • Rodriguez-Granados NY, Ramirez-Prado JS, Veluchamy A, Latrasse D, Raynaud C, Crespi M, Ariel F, Benhamed M. (2016) Put your 3D glasses on: plant chromatin is on show. J Exp Bot. 67(11):3205-21.
  • Ariel F, Romero-Barrios N, Jégu T, Benhamed M, Crespi M. (2015) Battles and hijacks: noncoding transcription in plants. Trends Plant Sci. 20(6):362-71.
  • Bruggeman Q, Raynaud C, Benhamed M, Delarue M. (2015) To die or not to die? Lessons from lesion mimic mutants. Front Plant Sci. 6:24. doi: 10.3389/fpls.2015.00024.
  • Raynaud C, Mallory A, Bruggeman Q , Delarue, M, Jégu T, Latrasse D, Bergounioux, C and Benhamed, M (2014) Chromatin meets the cell cycle. J. Exp. Bot. Special issue Plant Cell Cycle. 5(10):2677-89.

Haut de page