Publications POPS

La Plateforme TranscriptOmique de l'IPS2

Depuis 2003 la plateforme POPS est co-auteur de près de 190 publications, ce qui représente en moyenne 10 publications par an.

Affiliations de la plateforme

Université Paris-Saclay, CNRS, INRAE, Univ Evry, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France.
Université Paris Cité, CNRS, INRAE, Institute of Plant Sciences Paris-Saclay (IPS2), 91405, Orsay, France

2024

Méteignier L-V, Szwarc S, Barunava P, Durand M, Zamar D-L, Williams CB, Gautron N, Dutilleul C, Koudounas K, Lezin E, Perrot T, Oudin A, Pateyron S, Delannoy E, Brunaud V, Lanoue A, Abbasi BH, St-Pierre B, Jensen MK, Papon N, Sun C, Le Pogam-Alluard P, Ling Y, Beniddir MA, Besseau S, Courdavault V. (2024) Harnessing the spatial and transcriptional regulation of monoterpenoid indole alkaloid metabolism in Alstonia scholaris leads to the identification of broad geissoschizine cyclase activities. Plant Physiology and Biochemistry (Nov. 29) 109363. doi.org/10.1016/j.plaphy.2024.109363

Henchiri H, Rayapuram N, Alhoraibi HM, Caïus J, Paysant-Le Roux C, Citerne S, Hirt H, Colcombet J, Sturbois B, Bigeard J. (2024) Integrated multi-omics and genetic analyses reveal molecular determinants underlying Arabidopsis snap33 mutant phenotype. The Plant Journal. doi.org/10.1111/tpj.16647

2023

Liehrmann A, Delannoy E, Launay-Avon A, Gilbault E, Loudet O, Castandet B, Rigaill G. (2023) DiffSegR: an RNA-seq data driven method for differential expression analysis using changepoint detection. NAR Genom Bioinform. 2023 Nov 6;5(4):lqad098. doi: 10.1093/nargab/lqad098

Rogier O, Chateigner A, Lesage-Descauses MC, Mandin C, Brunaud V, Caius J, Soubigou-Taconnat L, Almeida-Falcon J, Bastien C, Benoit V, Bodineau G, Boizot N, Buret C, Charpentier JP, Déjardin A, Delaunay A, Fichot R, Laine Prade V, Laurans F, Le Jan I, Legac AL, Maury S, Gebreselassie MN, Poursat P, Ridel C, Sanchez L, Jorge V, Segura V. (2023) RNAseq based variant dataset in a black poplar association panel. BMC Res Notes. 2023 Oct 2;16(1):248. doi: 10.1186/s13104-023-06521-w

Tran HC, Schmitt V, Lama S, Wang C, Launay-Avon A, Bernfur K, Sultan K, Khan K, Brunaud V, Liehrmann A, Castandet B, Levander F, Rasmusson AG, Mireau H, Delannoy E, Van Aken O. (2023) An mTRAN-mRNA interaction mediates mitochondrial translation initiation in plants. Science. 2023 Sep;381(6661):eadg0995. doi: 10.1126/science.adg0995

Delannoy E, Batardiere B, Pateyron S, Soubigou-Taconnat L, Chiquet J, Colcombet J, Lang J. (2023) Cell specialization and coordination in Arabidopsis leaves upon pathogenic attack revealed by scRNA-seq. Plant Commun. 2023 Sep 11;4(5):100676. doi: 10.1016/j.xplc.2023.100676

Bellenger L, Ducos E, Feinard-Duranceau M, Vincent-Barbaroux C, Lanoue A, Unlubayir M, Abdallah C, Pourtau N, Porcheron B, Marmagne A, Launay-Avon A, Paysant Le Roux C, Méteignier LV, Pichon O, Dutilleul C. (2023) Protein farnesylation is involved in nitrogen starvation adaptation in Arabidopsis. Environmental and Experimental Botany, Vol 210, 105322. doi: 10.1016/j.envexpbot.2023.105322

Durand M, Brehaut V, Clement G, Kelemen Z, Macé J, Feil R, Duville G, Launay-Avon A, Paysant-Le Roux C, Lunn JE, Roudier F, Krapp A. (2023) The Arabidopsis transcription factor NLP2 regulates early nitrate responses and integrates nitrate assimilation with energy and carbon skeleton supply. The Plant Cell 35(5): 1429–1454. doi: 10.1093/plcell/koad025

Trémulot L, Macadré C, Gal J, Garmier M, Launay-Avon A, Paysant Le Roux C, Ratet P, NoctorG, Dufresne M. (2023) Impact of high atmospheric carbon dioxide on the biotic stress response of the model cereal species Brachypodium distachyon. Frontiers Plant Science Sec. Plant Abiotic Stress, vol.14. doi: 10.3389/fpls.2023.1237054

2022

Damerval C, Claudot C, Le Guilloux M, Conde E Silva N, Brunaud V, Soubigou-Taconnat L, Caïus J, Delannoy E, Nadot S, Jabbour F, Deveaux Y. (2022) Evolutionary analyses and expression patterns of TCP genes in Ranunculales. Frontiers in Plant Science doi: 10.3389/fpls.2022.1055196

D'Oria A, Jing L, Arkoun M, Pluchon S, Pateyron S, Trouverie J, Etienne P, Diquélou S, Ourry A. (2022) Transcriptomic, Metabolomic and Ionomic Analyses Reveal Early Modulation of Leaf Mineral Content in Brassica napus under Mild or Severe Drought. Int. J Mol Sci. 23(2):781. doi: 10.3390/ijms23020781

Castro PH, Couto D, Santos MÂ, Freitas S, Lourenço T, Dias E, Huguet S, Marques da Silva J, Tavares RM, Bejarano ER, Azevedo H. (2022) SUMO E3 ligase SIZ1 connects sumoylation and reactive oxygen species homeostasis processes in Arabidopsis. Plant Physiol. 189(2):934-954. doi: 10.1093/plphys/kiac085

Bouré N, Peaucelle A, Goussot M, Adroher B, Soubigou-Taconnat L, Borrega N, Bot C, Tariq Z, Martin-Magniette ML, Pautot V, Laufs P, Arnaud N. (2022) A cell wall-associated gene network shapes leaf boundary domains. Development. 149(11):dev200359. doi: 10.1242/dev.200359

Méteignier LV, Lecampion C, Velay F, Vriet C, Dimnet L, Rougée M, Breuer C, Soubigou-Taconnat L, Sugimoto K, Barneche F, Laloi C. (2022) Topoisomerase VI participates in an insulator-like function that prevents H3K9me2 spreading. Proc Natl Acad Sci U S A. 119(27):e2001290119. doi: 10.1073/pnas.2001290119

Thelander M, Landberg K, Muller A, Cloarec G, Cunniffe N, Huguet S, Soubigou-Taconnat L, Brunaud V, Coudert Y. (2022) Apical dominance control by TAR-YUC-mediated auxin biosynthesis is a deep homology of land plants. Curr Biol. 2022 S0960-9822(22)01026-0. doi: 10.1016/j.cub.2022.06.064

Larrieu A, Brunoud G, Guérault A, Lainé S, Hennet L, Stigliani A, Gildea I, Just J, Soubigou-Taconnat L, Balzergue S, Davies B, Scarpella E, Helariutta Y, Parcy F, Vernoux T. (2022) Transcriptional reprogramming during floral fate acquisition. iScience. 25(7):104683. doi: 10.1016/j.isci.2022.104683

Kalachova T, Škrabálková E, Pateyron S, Soubigou-Taconnat L, Djafi N, Collin S, Sekereš J, Burketová L, Potocký M, Pejchar P, Ruelland E. (2022) DIACYLGLYCEROL KINASE 5 Participates in Flagellin-Induced Signaling in Arabidopsis. Plant Physiol. kiac354. doi: 10.1093/plphys/kiac354

Rivarola Sena AC, Andres-Robin A, Vialette AC, Just J, Launay-Avon A, Borrega N, Dubreucq B, Scutt CP. (2022) Custom methods to identify conserved genetic modules applied to novel transcriptomic data from Amborella trichopoda. J Exp Bot. 73(8):2487-2498. doi: 10.1093/jxb/erac044

Tetiana Kalachova, Eliška Škrabálková, Stéphanie Pateyron, Ludivine Soubigou-Taconnat, Nabila Djafi, Sylvie Collin, Juraj Sekereš, Lenka BURKETOVA, Martin Potocký, Přemysl Pejchar, Eric Ruelland. (2022) An Arabidopsis mutant deficient in phosphatidylinositol-4-phosphate kinases ß1 and ß2 displays altered auxin-related responses in roots. Scient. Rep. 12(1):6947. doi: 10.1038/s41598-022-10458-8

Decouard Bérengère, Bailly Marlène, Rigault Martine, Marmagne Anne, Arkoun Mustapha, Soulay Fabienne, Caïus José, Paysant-Le Roux Christine, Louahlia Said, Jacquard Cédric, Esmaeel Qassim, Chardon Fabien, Masclaux-Daubresse Céline, Dellagi Alia (2022). Genotypic Variation of Nitrogen Use Efficiency and Amino Acid Metabolism in Barley. Frontiers in Plant Science 12. doi:10.3389/fpls.2021.807798

2021

Courbet Galatéa, Aurélien D’Oria, Anne Maillard, Lun Jing, Sylvain Pluchon, Mustapha Arkoun, Stéphanie Pateyron, Christine Paysant Le Roux, Sylvain Diquélou, Alain Ourry, Jacques Trouverie, and Philippe Etienne (2021). Comparative Omics Analysis of Brassica napus Roots Subjected to Six Individual Macronutrient Deprivations Reveals Deficiency-Specific Genes and Metabolomic Profiles. International Journal of Molecular Sciences 22(21): 11679. doi:10.3390/ijms222111679

Guilcher Marine, Arnaud Liehrmann, Chloé Seyman, Thomas Blein, Guillem Rigaill, Benoit Castandet, Etienne Delannoy (2021). Full length transcriptome highlights the coordination of plastid transcript processing. International journal of Molecular Sciences 22(20): 11297. doi:10.3390/ijms222011297

Jąkalski Marcin, Minasiewicz Julita, Caius José, May Michał, Selosse Marc-André, Delannoy Etienne. The Genomic Impact of Mycoheterotrophy in Orchids. Frontiers in Plant Science 2021 Jun 9; 12:1084. doi:10.3389/fpls.2021.632033

Deveaux Y, Conde E Silva N, Manicacci D, Le Guilloux M, Brunaud V, Belcram H, Joets J, Soubigou-Taconnat L, Delannoy E, Corti H, Balzergue S, Caius J, Nadot S, Damerval C. Transcriptome Analysis Reveals Putative Target Genes of APETALA3-3 During Early Floral Development in Nigella damascena L. Frontiers in Plant Science 2021 Jun 4;12:660803. doi: 10.3389/fpls.2021.660803.

Sow Mamadou Dia, Le Gac Anne-Laure, Fichot Régis, Lanciano Sophie, Delaunay Alain, Le Jan Isabelle, Lesage-Descause Marie-Claude, Citerne Sylvie, Caius José, Brunaud Véronique, Soubigou-Taconnat Ludivine, Cochard Hervé, Segura Vincent, Chaparro Cristian, Grunau Christoph, Daviaud Christian, Tost Jörg, Brignolas Franck, Strauss Steve, Mirouze Marie, Maury Stéphane (2021) RNAi suppression of DNA methylation affects drought stress response and genome integrity in transgenic poplar. New Phytologist

Kaori Sakai, Sylvie Citerne, Sébastien Antelme, Philippe Le Bris, Sylviane Daniel, Axelle Bouder , Angelina D'Orlando, Amy Cartwright, Frédérique Tellier, Stéphanie Pateyron , Etienne Delannoy , Debbie Laudencia-Chingcuanco, Grégory Mouille, Jean Christophe Palauqui, John Vogel, Richard Sibout (2021) BdERECTA controls vasculature patterning and phloem-xylem organization in Brachypodium distachyon. BMC plant biology

Ming Wang, Maria-Dolorès Pérez-Garcia, Jean-Michel Davière, François Barbier, Laurent Ogé, José Gentilhomme, Linda Voisine, Thomas Péron, Alexandra Launay-Avon, Gilles Clément, Nicolas Baumberger, Sandrine Balzergue, David Macherel, Philippe Grappin, Jessica Bertheloot, Patrick Achard, Latifa Hamama, Soulaiman Sakr (2021) Outgrowth of axillary bud in rose is controlled by sugar metabolism and signalling. The Journal of Experimental Botany

Claire Kamaliddin, Emilie Guillochon, Virginie Salnot, David Rombau, Stéphanie Huguet, François Guillonneau, Sandrine Houze, Philippe Deloron, Nicolas Argy, Bertin Gwladys (2021) Comprehensive analysis of transcript and protein relative abundance during blood stages of Plasmodium falciparum infection. Journal of Proteome research

Maud Fagny, Marieke Lydia Kuijjer, Maike Stam, Johann Joëts, Olivier Turc, Julien Rozière, Stéphanie Pateyron, Anthony Venon, Clémentine Vitte (2021) Identiﬁcation of key tissue-speciﬁc, biological processes by integrating enhancer information in maize gene regulatory networks. Frontiers in Genetics

Rana Jurdak, Alexandra Launay-Avon , Christine Paysant-Le Roux, Christophe Bailly (2021) Retrograde signalling from the mitochondria to the nucleus translates the positive effect of ethylene on dormancy breaking of Arabidopsis thaliana seed. New Physiologist

2020

Olivier Coen, Jing Lu, Wenjia Xu, Stéphanie Pateyron, Damaris Grain, Christine Péchoux, Loïc Lepiniec, Enrico Magnani (2020) A TRANSPARENT TESTA Transcriptional Module Regulates Endothelium Polarity. Frontiers in Plant Science

Richard Rigo, Jérémie Bazin, Natali Romero-Barrios, Michaël Moison, Leandro Lucero, Aurélie Christ, Moussa Benhamed, Thomas Blein, Stéphanie Huguet, Céline Charon, Martin Crespi, Federico Ariel (2020) The Arabidopsis lncRNA ASCO modulates the transcriptome through interaction with splicing factors. EMBO reports

Ilana Lambert, Christine Paysant-Le Roux, Stefano Colella, Marie-Laure Martin-Magniette (2020) DiCoExpress: a tool to process multifactorial RNAseq experiments from quality controls to co-expression analysis through differential analysis based on contrasts inside GLM models. Plant Methods

Soulie Marie-Christine, Miah Khoka shamsuddin, Floch kevin, Barbe Deborah, Soubigou-Taconnat Ludivine, Brunaud Véronique, Expert Dominique, Fagard Mathilde (2020) Plant nitrogen supply affects the Botrytis cinerea infection process and modulates known and novel virulence factors. Molecular Plant Pathology

Jie Luo, Marien Havé, Gilles Clément, Frédérique Tellier, Thierry Balliau, Alexandra Launay- Avon, Florence Guérard, Michel Zivy, Céline Masclaux-Daubresse (2020) Integrating multiple omics to identify common and speciﬁc molecular changes occurring in Arabidopsis under chronic nitrate and sulfate limitations. Journal of Experimental Botany

Philippe Etienne, Jacques Trouverie, Cylia Haddad, Mustapha Arkoun, Jean-claude Yvin, José Caius, Véronique Brunaud, Philippe Laîné (2020) Root silicon treatment modulates the shoot transcriptome in Brassica napus L. and in particular upregulates genes related to ribosomes and photosynthesis. Silicon Journal

Fabien Chardon, Gwendal Cueff, Etienne Delannoy, Fabien Aubé, Aurélia Lornac, Magali Bedu, Françoise Gilard, Stéphanie Pateyron, Hélène Rogniaux, Audrey Gargaros, Hakim Mireau, Loïc Rajjou, Marie-Laure Martin-Magniette, Françoise Budar (2020) The consequences of a disruption in cyto-nuclear co adaptation on the molecular response to a nitrate starvation in Arabidopsis. Plants

Vanesa S. Garcia de la Torre, Clarisse Majorel-Loulergue, Dubiel A. Gonzalez, Ludivine Soubigou-Taconnat, Guillem J. Rigaill, Yohan Pillon, Louise Barreau, Sébastien Thomine, Bruno Fogliani, Valérie Burtet-Sarramegna, Sylvain Merlot (2020) Wide Cross-species RNA-Seq Comparison Reveals Convergent Molecular Mechanisms Involved in Nickel Hyperaccumulation Across Dicotyledons. New Phytologist

Theory Aurélien Chateigner; Marie-Claude Lesage-Descauses; Odile Rogier; Véronique Jorge; Jean-Charles Leplé; Véronique Brunaud; Christine Paysant-Le Roux; Ludivine Soubigou-Taconnat; Marie-Laure Martin-Magniette; Leopoldo Sanchez; Vincent Segura (2020) Gene Expression Predictions and Networks in Natural Populations Supports the Omnigenic. BMC Genomics

Doll NM, Just J, Brunaud V, Caïus J, Grimault A, Depège-Fargeix N, Esteban E, Pasha A, Provart NJ, Ingram GC, Rogowsky PM, Widiez T. (2020) Transcriptomics at Maize Embryo/Endosperm Interfaces Identifies a Transcriptionally Distinct Endosperm Subdomain Adjacent to the Embryo Scutellum. Plant Cell

Malbert B, Burger M, Lopez-Obando M, Baudry K, Launay-Avon A, Härtel B, Verbitskiy D, Jörg A, Berthomé R, Lurin C, Takenaka M, Delannoy E. (2020) The Analysis of the Editing Defects in the dyw2 Mutant Provides New Clues for the Prediction of RNA Targets of Arabidopsis E+-Class PPR Proteins. Plants (Basel)

2019

Catherine Damerval, Hélène Citerne, Natalia Conde E Silva, Yves Deveaux, Etienne Delannoy, Johann Joets, Franck Simonnet, Yannick Staedler, Jürg Schönenberger, Jennifer Yansouni, Martine Le Guilloux, Hervé Sauquet, Sophie Nadot (2019) Unraveling the Developmental and Genetic Mechanisms Underpinning Floral Architecture in Proteaceae. Frontiers in Plant Science

Clément Cuello, AurélieBaldy, Véronique Brunaud, Johann Joets, Marie-Pierre Jacquemot, Lucy Botran, Yves Griveau, Cécile Guichard, Ludivine Soubigou-Taconnat, Marie-Laure Martin-Magniette, Philippe Leroy, Valérie Méchin, Matthieu Reymond, Sylvie Coursol (2019) Systems biology reveals a gene coexpression network associated with cell wall degradability in maize". PLoS One

Claire Kamaliddin, David Rombaut, Emilie Guillochon, Jade Royo, Sem Ezinmegnon, Stéphanie Huguet, Sayeh Guemouri, Céline Peirera, Cédric Broussard, Jules M Alao, Agnès Aubouy, François Guillonneau, Philippe Deloron, Gwladys.I Bertin (2019) From genomic to LC-MS/MS evidence: analysis of PfEMP1 in Benin malaria cases. PLoS One

Adnan Khan Niazi, Etienne Delannoy, Rana Khalid Iqbal, Daria Mileshina, Romain Val, Marta Gabryelska, Eliza Wyszko, Ludivine Soubigou-Taconnat, Maciej Szymanski, Jan Barciszewski, Frédérique Weber-Lotfi, José Manuel Gualberto, André Dietrich (2019) Mitochondrial transcriptome control and inter-compartment cross-talk during plant development. Cells

Polina Volkova, Gustavo T. Duarte, Ludivine Soubigou-Taconnat, Elizaveta A. Kazakova, Stéphanie Pateyron, Vladimir S. Bondarenko, Sofia V. Bitarishvili, Ekaterina S. Makarenko, Roman S. Churyukin, Maria A. Lychenkova, Irina V. Gorbatova, Christian Meyer, Stanislav A. Geras’kin (2019) Early response of barley embryos to low-dose gamma-irradiation of seeds triggers changes in the transcriptional profile and an increase of hydrogen peroxide content in seedlings. Journal of Agronomy and Crop Science

Wei Zhang, Françoise Cochet, Maharajah Ponnaiah, Sandrine Lebreton, Lucrèce Matheron, Cédric Pionneau, Marie Boudsocq, Francesca Resentini, Stéphanie Huguet, Miguel Ángel Blázquez, Christophe Bailly, Juliette Puyaubert, Emmanuel Baudouin (2019) The MPK8-TCP14 pathway promotes seed germination in Arabidopsis. Plant Journal

Céline FORZANI, Gustavo TURQUETO-DUARTE, Gilles CLEMENT, Stéphanie HUGUET, Christine PAYSANT-LE-ROUX, Raphaël MERCIER, Anne-Sophie LEPRINCE, Christian MEYER (2019) Mutations of the AtYAK1 kinase suppress TOR deficiency in Arabidopsis. Cell Reports

Frédéric Chauffour, Marlène Bailly, François Perreau, Gwendal Cueff, Hiromi Suzuki, Boris Collet, Anne Frey, Gilles Clément, Ludivine Soubigou-Taconnat, Thierry Balliau, Anja Krieger-Liszkay, Loïc Rajjou, Annie Marion-Poll (2019) Multi-omics analysis reveals sequential roles for ABA during Arabidopsis seed maturation. Plant Physiology

Stefania Del Prete, Anne Molitor, Delphine Charif, Nadia Bessoltane, Ludivine Soubigou- Taconnat, Cécile Guichard, Véronique Brunaud, Fabienne Granier, Paul Fransz, Valérie Gaudin (2019) Extensive nuclear reprogramming and 1 endoreduplication in mature leaf during floral induction. BMC Plant Biology

Gwyneth Ingram, Audrey Creff, Lysiane Brocard, Céline Vicedo, Vincent Duplan, Jérôme Joubès, Ludivine Taconnat, Nicolas Doll (2019) A stress-response-related inter-compartmental signalling pathway regulates embryonic cuticle integrity in Arabidopsis. PLOS Genetics

Mélodie Sawicki, Marine Rondeau, Barbara Courteaux, Fanja Rabenoelina, Eric Gomès, Ludivine Soubigou-Taconnat, Sandrine Balzergue, Christophe Clément, Essaid Ait Barka, Nathalie Vaillant-Gaveau, Cédric Jacquard (2019). On a cold night: transcriptomics of grapevine flower unveals signal transduction and impacted metabolism. IJMS

Haddad C, Trouverie J, Arkoun M, Yvin JC, Caïus J, Brunaud V, Laîné P, Etienne P. (2019) Silicon supply affects the root transcriptome of Brassica napus L. Planta

Lallemand F, Martin-Magniette ML, Gilard F, Gakière B, Launay-Avon A, Delannoy É, Selosse MA. (219) In situ transcriptomic and metabolomic study of the loss of photosynthesis in the leaves of mixotrophic plants exploiting fungi. Plant Journal

2018

Xia Q, Saux M, Ponnaiah M, Gilard F, Perreau F, Huguet S, Balzergue S, Langlade N, Bailly C, Meimoun P, Corbineau F, El-Maarouf-Bouteau H. (2018) One Way to Achieve Germination: Common Molecular Mechanism Induced by Ethylene and After-Ripening in Sunflower Seeds. International Journal of Molecular Sciences

Alberto D, Couée I, Pateyron S, Sulmon C, Gouesbet G. (2018) Low doses of triazine xenobiotics mobilize ABA and cytokinin regulations in a stress- and low-energy-dependent manner. Plant Science

Farjad M, Rigault M, Pateyron S, Martin-Magniette ML, Krapp A, Meyer C, Fagard M. (2018) Nitrogen Limitation Alters the Response of Specific Genes to Biotic Stress. International Journal of Molecular Sciences

Rogier O, Chateigner A, Amanzougarene S, Lesage-Descauses MC, Balzergue S, Brunaud V, Caius J, Soubigou-Taconnat L, Jorge V, Segura V. (2018) Accuracy of RNAseq based SNP discovery and genotyping in Populus nigra. BMC Genomics

Armezzani A, Abad U, Ali O, Andres Robin A, Vachez L, Larrieu A, Mellerowicz EJ, Taconnat L, Battu V, Stanislas T, Liu M, Vernoux T, Traas J, Sassi M. (2018) Transcriptional induction of cell wall remodelling genes is coupled to microtubule-driven growth isotropy at the shoot apex in Arabidopsis.Development

Sakai K, Taconnat L, Borrega N, Yansouni J, Brunaud V, Paysant-Le Roux C, Delannoy E, Martin Magniette ML, Lepiniec L, Faure JD, Balzergue S, Dubreucq B. (2018) Combining laser-assisted microdissection (LAM) and RNA-seq allows to perform a comprehensive transcriptomic analysis of epidermal cells of Arabidopsis embryo. Plant Methods

Abdelkefi H, Sugliani M, Ke H, Taconnat L, Citerne S, Mouille G, Fakhfakh H, Robaglia C, Field B. (2018) Guanosine tetraphosphate modulates salicylic acid signalling and the resistance of Arabidopsis thaliana to turnip mosaic virus. Molecular Plant Pathology

Rey E, Abrouk M, Keeble-Gagnère G, Karafiátová M, Vrána J, Balzergue S, Soubigou-Taconnat L, Brunaud V, Martin-Magniette ML, Endo TR, Bartoš J. (2018) Transcriptome reprogramming due to the introduction of a barley telosome into bread wheat affects more barley genes than wheat. Plant Biotechnology Journal

Lloyd A, Blary A, Charif D, Charpentier C, Tran J, Balzergue S, Delannoy E, Rigaill G, Jenczewski E. (2018) Homoeologous exchanges cause extensive dosage-dependent gene expression changes in an allopolyploid crop. New Phytologist

Rigaill G, Balzergue S, Brunaud V, Blondet E, Rau A, Rogier O, Caius J, Maugis-Rabusseau C, Soubigou-Taconnat L, Aubourg S, Lurin C, Martin-Magniette ML, Delannoy E. (2018) Synthetic data sets for the identification of key ingredients for RNA-seq differential analysis. Briefings in Bioinformatics

Pascal Montoro, Shuangyang Wu, Bénédicte Favreau, Eva Herlinawati, Cécile Labrune, Marie-Laure Martin-Magniette, Stéphanie Pointet, Maryannick Rio, Julie Leclercq, Sigit Ismawanto, Kuswanhadi (2018) Transcriptome analysis in Hevea brasiliensis latex revealed changes in hormone signalling pathways in response to ethephon and Tapping Panel Dryness. Scientific Reports 8, 8483. doi.org/10.1038/s41598-018-26854-y

Christine GIROUSSE, Jane ROCHE, Claire. GUERIN, Jacques LE GOUIS, Sandrine BALZERGUE, Said MOUZEYAR, Mohamed Fouad BOUZIDI (2018) Coexpression network analysis identify genes associated with the effect of warming on grain yield components in wheat. PLoS One 2018 Jun 25;13(6):e0199434. doi: 10.1371/journal.pone.0199434

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2017

Herrbach V, Chirinos X, Rengel D, Agbevenou K, Vincent R, Pateyron S, Huguet S, Balzergue S, Pasha A, Provart N, Gough C, Bensmihen S. (2017) Nod factors potentiate auxin signaling for transcriptional regulation and lateral root formation in Medicago truncatula. Journal of experimental botany

Basbouss-Serhal I, Pateyron S, Cochet F, Leymarie J, Bailly C. (2017) 5' to 3' mRNA decay contributes to the regulation of Arabidopsis seed germination by dormancy. Plant Physiology

Baptiste Genot, Julien Lang, Souha Berriri, Marie Garmier, Francoise Gilard, Stéphanie Pateyron, Katrien Haustraete, Dominique Van Der Straeten, Heribert Hirt, Jean Colcombet. (2017) Constitutively Active MPK3 reveals convergence of MPK3 and the MPK4-guarding pathway SUMM1/SUMM2. Plant Physiology

Maria Naranjo Arcos, Felix Maurer, Johannes Meiser, Stéphanie Pateyron, Claudia Fink-Straube, Petra Bauer (2017) Dissection of iron signaling and iron accumulation by overexpression of subgroup Ib bHLH039 protein. Scientific Reports

Aline voxeur, Ludivine Soubigou-Taconnat, Frédéric Legée, Kaori Sakai, Mylène Durand-Tardif, Catherine Lapierre, Richard Sibout (2017) Altered lignification in mur1-1 a mutant deficient in GDP-L-fucose synthesis with reduced RG-II cross linking. PLOS ONE

Guillaumot D, Lopez-Obando M, Baudry K, Avon A, Rigaill G, Falcon de Longevialle A, Broche B, Takenaka M, Berthomé R, De Jaeger G, Delannoy E, Lurin C. (2017) Two interacting PPR proteins are major Arabidopsis editing factors in plastid and mitochondria. PNAS

Martins S, Montiel-Jorda A, Cayrel A, Huguet S, Roux CP, Ljung K, Vert G. (2017) Brassinosteroid signaling-dependent root responses to prolonged elevated ambient temperature. Nature communications

Gayral M, Elmorjani K, Dalgalarrondo M, Balzergue S, Pateyron S, Morel MH, Brunet S, Linossier L, Delluc C, Bakan B, Marion D. (2017) Responses to Hypoxia and Endoplasmic Reticulum Stress Discriminate the Development of Vitreous and Floury Endosperms of Conventional Maize (Zea mays) Inbred Lines. Frontiers in plant science

Enrico Magnani, José M Jiménez-Gómez, Ludivine Soubigou-Taconnat, Loïc Lepiniec, Elisa Fiume. (2017) Profiling the onset of somatic embryogenesis in Arabidopsis. BMC Genomics

Galland M, He D, Lounifi I, Arc E, Clément G, Balzergue S, Huguet S, Cueff G, Godin B, Collet B, Granier F, Morin H, Tran J, Valot B, Rajjou L. (2017) An Integrated "Multi-Omics" Comparison of Embryo and Endosperm Tissue-Specific Features and Their Impact on Rice Seed Quality. Frontiers in plant science

Zarattini, M., Launay, A., Farjad, M., Wénès, E., Taconnat, L., Boutet, S., Bernacchia, G., Fagard, M. (2017) The bile acid deoxycholate elicits defences in Arabidopsis and reduces bacterial infection. Molecular plant pathology

Hela Abdelkefi, Matteo Sugliani, Hang Ke, Ludivine Taconnat, Sylvie Citerne, Gregory Mouille, Hatem Fakhfakh, Christophe Robaglia, Ben Field (2017) Guanosine tetraphosphate modulates salicylic acid signalling and the resistance of Arabidopsis thaliana to turnip mosaic virus. Molecular Plant Pathology

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2016

Leonard Shumbe, Anne Chevalier, Bertrand Legeret, Ludivine Taconnat, Fabien Monnet, Michel Havaux (2016) Singlet Oxygen-Induced Cell Death in Arabidopsis under High Light Stress is Controlled by OXI1 Kinase. Plant Physiology

Elise Albert; Justine Gricourt; Nadia Bertin; Julien Bonnefoi; Stéphanie Pateyron; Jean Philippe Tamby; Frédérique Bitton; Mathilde Causse (2016) Genotype by watering regime interactions in cultivated tomato: lessons from linkage mapping and gene expression. Theoretical and Applied Genetics

Marco ZARATTINI, Alban LAUNAY, Estelle WÉNÈS, Mahsa FARJAD, Ludivine TACONNAT, Stéphanie BOUTET, Giovanni BERNACCHIA, Mathilde FAGARD (2016) The bile acid Deoxycholate Elicits WAK2-dependent defenses in Arabidopsis and reduces bacterial infection. Molecular Plant Pathology

Pedroza-Garcia JA, Domenichini S, Mazubert C, Bourge M, White C, Hudik E, Bounon R, Tariq Z, Delannoy E, Del Olmo I, Piñeiro M, Jarillo Quiroga JA, Bergounioux C, Benhamed M, Raynaud C (2016) Role of the Polymerase ϵ sub-unit DPB2 in DNA replication, cell cycle regulation and DNA damage response in Arabidopsis. Nucleic Acids Research

Anne-Sophie Dumas; Ludivine Taconnat; Evangelos Barbas; Guillem Rigaill; Olivier Catrice; Delphine Bernard; Abdelilah Benamar; David Macherel; Abdelhak El Amrani; Richard Berthomé (2016) Unraveling the early molecular and physiological mechanisms involved in response to phenanthrene exposure. BMC Genomics

Lang J, Gonzalez-Mula A, Taconnat L, Clement G, Faure D (2016) The plant GABA signaling downregulates horizontal transfer of the Agrobacterium tumefaciens virulence plasmid. New Phytologist

Castro PH, Couto D, Freitas S, Verde N, Macho AP, Huguet S, Botella MA, Ruiz-Albert J, Tavares RM, Bejarano ER, Azevedo H (2016) SUMO proteases ULP1c and ULP1d are required for development and osmotic stress responses in Arabidopsis thaliana. Plant Mol Biol

Thomas Rey, Philippe Laporte, Maxime Bonhomme, Marie-Françoise Jardinaud, Stéphanie Huguet, Sandrine Balzergue, Bernard Dumas, Andreas Niebel, Christophe Jacquet (2016) MtNF-YA1, A Central Transcriptional Regulator of Symbiotic Nodule Development, Is Also a Determinant of Medicago truncatula Susceptibility toward a Root Pathogen. Frontiers Science

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2015

Zaag, Rim; Tamby, Jean Philippe; Guichard, Cécile; Tariq, Zakia; Rigaill, Guillem; Delannoy, Etienne; Renou, Jean-Pierre; Balzergue, Sandrine; Mary-Huard, Tristan; Aubourg, Sébastien; Martin-Magniette, Marie-Laure; Brunaud, Véronique (2015) GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. Nucleic Acids Research

Martinez de alba, Angel Emilio; Moreno, Ana; Gabriel, Marc; Mallory, Allison; Christ, Aurélie; Bounon, Rémi; Balzergue, Sandrine; Aubourg, Sébastien; Gautheret, Daniel; Crespi, Martin; Vaucheret, H.; Maizel, Alexis (2015) In plants, decapping prevents RDR6-dependent production of deleterious small RNAs from endogenous mRNAs. Nucleic Acids Research

Yacine Badis, Maxime Bonhomme, Claude Lafitte, Stéphanie Huguet, Sandrine Balzergue, Bernard Dumas, Christophe Jacquet (2015) Transcriptome analysis highlights preformed defenses and signaling pathways controlled by the prAe1 QTL, conferring partial resistance to Aphanomyces euteiches in Medicago truncatula. Molecular Plant Pathology

Danquah A, de Zélicourt A, Boudsocq M, Neubauer J, Frei Dit Frey N, Leonhardt N, Pateyron S, Gwinner F, Tamby JPh, Ortiz-Masia D, Marcote MJ, Hirt H, Colcombet J. (2015) Identification and characterization of an ABA-activated MAP kinase cascade in Arabidopsis thaliana. The Plant Journal

Basbouss-Serhal I, Soubigou-Taconnat L, Bailly C, Leymarie J. (2015) Germination potential of dormant and non-dormant Arabidopsis seeds is driven by distinct recruitment of mRNAs to polysomes. Plant Physiology

Magnard JL, Roccia A, Caissard JC, Vergne P, Sun P, Hecquet R, Dubois A, Hibrand-Saint Oyant L, Jullien F, Nicolè F, Raymond O, Huguet S, Baltenweck R, Meyer S, Claudel P, Jeauffre J, Rohmer M, Foucher F, Hugueney P, Bendahmane M, Baudino (2015) PLANT VOLATILES. Biosynthesis of monoterpene scent compounds in roses. Science

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2014

Moreau S, Fromentin J, Vailleau F, Vernié T, Huguet S, Balzergue S, Frugier F, Gamas P, Jardinaud MF (2014) The symbiotic transcription factor MtEFD and cytokinins are positively acting in the Medicago truncatula and Ralstonia solanacearum pathogenic interaction. New Phytologist

Meimoun P, Mordret E, Langlade NB, Balzergue S, Arribat S, Bailly C, El-Maarouf-Bouteau H (2014) Is gene transcription involved in seed dry after-ripening? PLoS One

Quentin Bruggeman, Marie Garmier, Linda de Bont, Ludivine Soubigou-Taconnat, Christelle Mazubert, Moussa Benhamed, Cécile Raynaud, Catherine Bergounioux, Marianne Delarue (2014) The Polyadenylation Factor Subunit CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR30: A Key Factor of Programmed Cell Death and a Regulator of Immunity in Arabidopsis. Plant Physiology

Aznar A, Chen NW, Rigault M, Riache N, Joseph D, Desmaële D, Mouille G, Boutet S, Soubigou-Taconnat L, Renou JP, Thomine S, Expert D, Dellagi A (2014) Scavenging iron: a novel mechanism of plant immunity activation by microbial siderophores. Plant Physiology

Virginie Bourion, Chantal Martin, Henri de Larambergue, Françoise Jacquin, Grégoire Aubert, Marie-Laure Martin-Magniette, Sandrine Balzergue, Geoffroy Lescure, Sylvie Citerne, Marc Lepetit, Nathalie Munier-Jolain, Christophe Salon, Gérard Duc (2014) Unexpectedly low nitrogen acquisition and absence of root architecture adaptation to nitrate supply in a Medicago truncatula highly-branched root mutant. Journal of Experimental Botany

Florian Bardou, Federico Ariel, Craig G. Simpson, Philippe Laporte, Sandrine Balzergue, John W.S. Brown and Martin Crespi (2014) Long noncoding RNA modulates alternative splicing regulators in Arabidopsis. Developmental Cell

Martin L, Decourteix M, Badel E, Huguet S, Moulia B, Julien JL, Leblanc-Fournier N (2014) The zinc finger protein PtaZFP2 negatively controls stem growth and gene expression responsiveness to external mechanical loads in poplar. New Phytologist

El-Maarouf-Bouteau, Hayat; Sajjad, Yasar; Bazin, Jeremie; Langlade, Nicolas B; Cristescu, Simona M.; Balzergue, Sandrine; Baudouin, Emmanuel; Bailly, Christophe (2014) Reactive oxygen species, abscisic acid and ethylene interact to regulate sunflower seed germination. Plant Cell & Environment

Truong, Hoai-Nam; Thalineau, Elise; Bonneau, Laurent; Fournier, Carine; Potin, Sophie; Balzergue, Sandrine; van Tuinen, Diederik; Jeandroz, Sylvain; Morandi, Dominique (2014) The Medicago truncatula hypermycorrhizal B9 mutant displays an altered response to phosphate and is more susceptible to Aphanomyces euteiches. Plant Cell & Environment

Vladimír Šašek, Martin Janda, Elise Delage, Juliette Puyaubert, Anne Guivarc’h, Encarnación López Maseda, Petre I. Dobrev, José Caius, Károly Bóka, Olga Valentová, Lenka Burketová, Alain Zachowski and Eric Ruelland (2014) Constitutive salicylic acid accumulation in pi4kIIIb1b2 Arabidopsis plants stunts rosette but not root growth. New Phytologist

Gwenaëlle Marchand, Vaˆn Anh Huynh-Thu, Nolan C. Kane, Sandrine Arribat, Didier Varès, David Rengel, Sandrine Balzergue, Loren H. Rieseberg, Patrick Vincourt, Pierre Geurts, Matthieu Vignes, and Nicolas B. Langlade (2014) Bridging physiological and evolutionary time-scales in a gene regulatory network. New Phytologist

Jean-Claude Pasquet, Séjir Chaouch, Catherine Macadré, Sandrine Balzergue, Stéphanie Huguet, Marie-Laure Martin-Magniette, Floriant Bellvert, Xavier Deguercy, Vincent Thareau, Dimitri Heintz, Patrick Saindrenan and Marie Dufresne (2014) Differential gene expression and metabolomic analyses of Brachypodium distachyon infected by deoxynivalenol producing and non-producing strains of Fusarium graminearum. BMC Genomics

Nicolas Frei dit Frey, Ana Victoria Garcia, Jean Bigeard, Rim Zaag, Eduardo Bueso, Marie Garmier, Stéphanie Pateyron, Marie-Ludivine de Tauzia-Moreau, Véronique Brunaud, Sandrine Balzergue, Jean Colcombet, Sébastien Aubourg, Marie-Laure Martin-Magniette and Heribert Hirt (2014) Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences. Genome Biology

Lange H, Zuber H, Sement FM, Chicher J, Kuhn L, Hammann P, Brunaud V, Bérard C, Bouteiller N, Balzergue S, Aubourg S, Martin-Magniette ML, Vaucheret H, Gagliardi D (2014) The RNA helicases AtMTR4 and HEN2 target specific subsets of nuclear transcripts for degradation by the nuclear exosome in Arabidopsis thaliana. PLoS Genetics

Elodie Hudik, Yasushi Yoshioka, Séverine Domenichini, Mickaël Bourge, Ludivine Soubigou-Taconnat, Christelle Mazubert, Dalong Yi, Lieven De Veylder, Catherine Bergounioux, Moussa Benhamed and Cécile Raynauda (2014) Chloroplast dysfunction causes multiple defects in cell cycle progression in the Arabidopsis crumpled leaf mutant. Plant Physiology

Barthole, G ; To, A ; Marchive, C ; Brunaud, V ; Soubigou-Taconnat, L ; Berger, N ; Dubreucq, B ; Lepiniec, L ; Baud, S (2014) MYB118 represses endosperm maturation in seeds of Arabidopsis. Plant Physiology

Arnaud, C ; Clement, M ; Thibaud, MC ; Javot, H ; Chiarenza, S ; Delannoy, E ; Revol, J ; Soreau, P ; Balzergue, S ; Block, MA ; Marechal, E ; Desnos, T ; Nussaume, L (2014) Identification of phosphatin, a drug alleviating Pi starvation responses in Arabidopsis. Plant Physiology

Bardou F, Ariel F, Simpson CG, Romero-Barrios N, Laporte P, Balzergue S, Brown JW, Crespi M (2014) Long Noncoding RNA Modulates Alternative Splicing Regulators in Arabidopsis. Developmental Cell

Galland M, Boutet-Mercey S, Lounifi I, Godin B, Balzergue S, Grandjean O, Morin H, Perreau F, Debeaujon I, Rajjou L (2014) Compartmentation and dynamics of flavone metabolism in dry and germinated rice seeds. Plant and Cell Physiology

Layat E, Leymarie J, El-Maarouf-Bouteau H, Caius J, Langlade N, Bailly C (2014) Translatome profiling in dormant and nondormant sunflower (Helianthus annuus) seeds highlights post-transcriptional regulation of germination. New Phytologist

2013

Eisenhut M, Planchais S, Cabassa C, Guivarc'h A, Justin AM, Taconnat L, Renou JP, Linka M, Gagneul D, Timm S, Bauwe H, Carol P, Weber AP (2013) Arabidopsis A BOUT DE SOUFFLE is a putative mitochondrial transporter involved in photorespiratory metabolism and is required for meristem growth at ambient CO(2) levels. The Plant Journal

Renault H, El Amrani A, Berger A, Mouille G, Soubigou-Taconnat L, Bouchereau A, Deleu C (2013) Gama-Aminobutyric acid transaminase deficiency impairs central carbon metabolism and leads to cell wall defects during salt stress in Arabidopsis roots. Plant Cell & Environment

Alexandre Degrave, Manon Moreau, Alban Launay, Marie-Anne Barny, Marie-Noëlle Brisset, Oriane Patrit, Ludivine Taconnat, Régine Vedel, and Mathilde Fagard (2013) The bacterial effector DspA/E is toxic in Arabidopsis thaliana and is required for multiplication and survival of fire blight pathogen. Molecular Plant Pathology

Cole M, Jacobs B, Soubigou-Taconnat L, Balzergue S, Renou JP, Chandler JW, Werr W (2013) Live imaging with the DORNRÖSCHEN and DORNRÖSCHEN-LIKE promoter reveals dynamic changes in cell identity at the surface of microcalli of Arabidopsis embryonic suspensions. Plant Cell Reports

Emilie Andrio, Daniel Marino, Anthony Marmeys, Marion Dunoyer de Segonzac, Isabelle Damiani, Andrea Genre, Stéphanie Huguet, Pierre Frendo, Alain Puppo, Nicolas Pauly (2013) Hydrogen peroxide-regulated genes in the Medicago truncatula–Sinorhizobium meliloti symbiosis. New Phytologist

Thomas Rey, Amaury Nars, Maxime Bonhomme, Arnaud Bottin, Stephanie Huguet Sandrine Balzergue, Marie-Françoise Jardinaud, Jean-Jacques Bono, Julie Cullimore, Bernard Dumas, Clare Gough and Christophe Jacquet (2013) NFP, a LysM protein controlling Nod factor perception, also intervenes in Medicago truncatula resistance to pathogens. New Phytologist

Jubault M, Lariagon C, Taconnat L, Renou JP, Gravot A, Delourme R, Manzanares-Dauleux MJ (2013) Partial resistance to clubroot in Arabidopsis is based on changes in the host primary metabolism and targeted cell division and expansion capacity. Functional & Integrative Genomics

Laurent Bonneau, Stephanie Huguet, Daniel Wipf, Nicolas Pauly and Hoai-Nam Truong (2013) Combined phosphate and nitrogen limitation generates a nutrient stress transcriptome favorable for arbuscular mycorrhizal symbiosis in Medicago truncatula. New Phytologist

Chloé Marchive, François Roudier, Loren Castaings, Virginie Bréhaut, Eddy Blondet, Vincent Colot, Christian Meyer, Anne Krapp (2013) Nuclear retention of the transcription factor NLP7 orchestrates the early response to nitrate in plants. Nature Communications

Djafi N, Vergnolle C, Cantrel C, Wietrzyñski W, Delage E, Cochet F, Puyaubert J, Soubigou-Taconnat L, Gey D, Collin S, Balzergue S, Zachowski A, Ruelland E. (2013) The Arabidopsis DREB2 genetic pathway is constitutively repressed by basal phosphoinositide-dependent phospholipase C coupled to diacylglycerol kinase. Frontiers in Plant Physiology

Garcia AV, Charrier A, Schikora A, Bigeard J, Pateyron S, de Tauzia-Moreau ML, Evrard A, Mithöfer A, Martin-Magniette ML, Virlogeux-Payant I, Hirt H (2013) Salmonella enterica flagellin is recognized via FLS2 and activates PAMP-triggered immunity in Arabidopsis thaliana. Molecular Plant

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2012

Moreau M, Azzopardi M, Clément G, Dobrenel T, Marchive C, Renne C, Martin-Magniette ML, Taconnat L, Renou JP, Robaglia C, Meyer C (2012) Mutations in the Arabidopsis Homolog of LST8/GβL, a Partner of the Target of Rapamycin Kinase, Impair Plant Growth, Flowering, and Metabolic Adaptation to Long Days. PlantCell

Junker A, Mönke G, Rutten T, Keilwagen J, Seifert M, Thi TM, Renou JP, Balzergue S, Viehöver P, Hähnel U, Ludwig-Müller J, Altschmied L, Conrad U, Weisshaar B, Bäumlein H (2012) Elongation-related functions of LEAFY COTYLEDON1 during the development of Arabidopsis thaliana. Plant Journal

Damiani I, Baldacci-Cresp F, Hopkins J, Andrio E, Balzergue S, Lecomte P, Puppo A, Abad P, Favery B, Hérouart D (2012) Plant genes involved in harbouring symbiotic rhizobia or pathogenic nematodes. New Phytologist

Pétriacq P, de Bont L, Hager J, Didierlaurent L, Mauve C, Guérard F, Noctor G, Pelletier S, Renou JP, Tcherkez G, Gakière B. (2012) Inducible NAD overproduction in Arabidopsis alters metabolic pools and gene expression correlated with increased salicylate content and resistance to Pst-AvrRpm1. Plant Journal

Dutilleul C, Benhassaine-Kesri G, Demandre C, Rézé N, Launay A, Pelletier S, Renou JP, Zachowski A, Baudouin E, Guillas I (2012) Phytosphingosine-phosphate is a signal for AtMPK6 activation and Arabidopsis response to chilling. New Phytologist

Moreau M, Degrave A, Vedel R, Bitton F, Patrit O, Renou JP, Barny MA, Fagard M (2012) EDS1 Contributes to Nonhost Resistance of Arabidopsis thaliana Against Erwinia amylovora. Molecular Plant Microbe Interact

Francisco A Cubillos, Jennifer Yansouni, Hamid Khalili, Sandrine Balzergue, Samira Elftieh, Marie-Laure Martin-Magniette, Yann Serrand, Loic Lepiniec, Sebastien Baud, Bertrand Dubreucq, Jean-Pierre Renou, Christine Camilleri and Olivier Loudet (2012) Expression variation in connected recombinant populations of Arabidopsis thaliana highlights distinct transcriptome architectures. BMC Genomics

Eudes A, George A, Mukerjee P, Kim JS, Pollet B, Benke PI, Yang F, Mitra P, Sun L, Cetinkol OP, Chabout S, Mouille G, Soubigou-Taconnat L, Balzergue S, Singh S, Holmes BM, Mukhopadhyay A, Keasling JD, Simmons BA, Lapierre C, Ralph J, Loqué D (2012) Biosynthesis and incorporation of side-chain-truncated lignin monomers to reduce lignin polymerization and enhance saccharification. Plant Biotechnology Journal

Clara Bourbousse, Ikhlak Ahmed, François Roudier, Gérald Zabulon, Eddy Blondet, Sandrine Balzergue, Vincent Colot, Chris Bowler and Frédy Barneche (2012) Histone H2B monoubiquitination facilitates the rapid modulation of gene expression during Arabidopsis photomorphogenesis. PLoS Genetics

Rosa Lozano-Durán, Irene Garcia, Stéphanie Huguet, Sandrine Balzergue, Luís Romero & Eduardo R. Bejarano (2012) Geminivirus C2 protein represses genes involved in sulphur assimilation and this effect can be counteracted by jasmonate treatment. European Journal of Plant Pathology

Morgane Gicquel, Ludivine Taconnat, Jean-Pierre Renou, Marie-Andrée Esnault, Francisco Cabello-Hurtado (2012) Kinetic transcriptomic approach revealed metabolic pathways and genotoxic-related changes implied in the Arabidopsis response to ionising radiations. Plant Science

Fanny Ramel, Simona Birtic, Christian Ginies, Ludivine Soubigou-Taconnat, Christian Triantaphylidès, and Michel Havaux (2012) Carotenoid oxidation products are stress signals that mediate gene responses to singlet oxygen in plants. PNAS

Audrey Courtial, Cyril Jourda, Sandrine Arribat, Sandrine Balzergue, Stéphanie Huguet, Matthieu Reymond, Jacqueline Grima-Pettenati, Yves Barrière (2012) Comparative expression of cell wall related genes in four maize RILs and one parental line of variable lignin content and cell wall degradability. Meydica

David Rengel, Sandrine Arribat, Pierre Maury, Marie-Laure Martin-Magniette, Thibaut Hourlier, Marion Laporte, Didier Varès, Sébastien Carrère, Philippe Grieu, Sandrine Balzergue, Jérôme Gouzy, Patrick Vincourt and Nicolas B. Langlade (2012) A gene-phenotype network based on genetic variability for drought responses reveals key physiological processes in controlled and natural environments. PLoSOne

Jean-Marc Lacape, Michel Claverie, Ramon O. Vidal, Marcelo F Carazzolle, Gonçalo A Guimarães Pereira, Manuel Ruiz, Martial Pré, Danny Llewellyn, Yves Al-Ghazi, John Jacobs, Janine Jean, Christopher Viot, Alexis Dereeper, Stéphanie Huguet, Marc Giband1, Claire Lanaud (2012) Deep sequencing reveals differences in the transcriptional landscapes of fibers from two cultivated species of cotton. PLoSOne

Ruben Puga-Freitas; Sébastien Barot; Ludivine Taconnat; Jean-Pierre Renou; Manuel Blouin, Ph.D (2012) Signal molecules mediate the impact of the earthworm Aporrectodea caliginosa on growth, development and defence of the plant Arabidopsis thaliana. PLoSOne

Caracuel Z, Lozano-Durán R, Huguet S, Arroyo-Mateos M, Rodríguez-Negrete EA, Bejarano ER (2012) C2 from Beet curly top virus promotes a cell environment suitable for efficient replication of geminiviruses, providing a novel mechanism of viral synergism. New Phytologist

Markakis MN, De Cnodder T, Lewandowski M, Simon D, Boron A, Balcerowicz D, Doubbo T, Taconnat L, Renou JP, Höfte H, Verbelen JP, Vissenberg K (2012) Identification of genes involved in the ACC-mediated control of root cell elongation in Arabidopsis thaliana. BMC Plant Biology

2011

Libeau, Pierre; Durandet, Monique; Granier, Fabienne; Marquis, Catherine; Berthomé, Richard; Renou, Jean-Pierre; Taconnat-Soubirou, Ludivine; HORLOW, Christine (2011) Gene Expression profiling of Arabidopsis meiocytes. Plant Biology

Rosa Lozano-Durán, Tabata Rosas-Díaz, Giuliana Gusmaroli, Ana P. Luna, Ludivine Taconnat, Xing Wang Deng and Eduardo (2011) Bejarano Geminiviruses Subvert Ubiquitination by Altering CSN-Mediated Derubylation of SCF E3 Ligase Complexes and Inhibit Jasmonate Signaling in Arabidopsis thaliana. The Plant Cell

Sormani R, Delannoy E, Lageix S, Bitton F, Lanet E, Saez-Vasquez J, Deragon JM, Renou JP, Robaglia C (2011) Sub-Lethal Cadmium Intoxication In Arabidopsis thaliana Impacts Translation At Multiple Levels. Plant Cell Physiol

Florence Jay, Yu Wang, Agnès Yu, Ludivine Taconnat, Sandra Pelletier, Vincent Colot, Jean-Pierre Renou, Olivier Voinnet (2011) Misregulation of AUXIN RESPONSE FACTOR 8 underlies the developmental abnormalities caused by three distinct viral silencing suppressors in Arabidopsis. PLoS Pathogens

Latrasse D, Germann S, Houba-Hérin N, Dubois E, Bui-Prodhomme D, Hourcade D, Juul-Jensen T, Le Roux C, Majira A, Simoncello N, Granier F, Taconnat L, Renou JP, Gaudin V (2011) Control of flowering and cell fate by LIF2, an RNA binding partner of the polycomb complex component LHP1. PLoS One

Daniel Bouyer, Francois Roudier, Maren Heese, Ellen D. Andersen, Delphine Gey, Moritz K. Nowack, Justin Goodrich, Jean-Pierre Renou, Paul E. Grin3, Vincent Colot, Arp Schnittger (2011) Polycomb Repressive Complex 2 Controls the Embryo-to-Seedling Phase TransitionMarch 10, 2011, PLoS Genetics

Berthet S, Demont-Caulet N, Pollet B, Bidzinski P, Cézard L, Le Bris P, Borrega N, Hervé J, Blondet E, Balzergue S, Lapierre C, Jouanin L (2011) Disruption of LACCASE4 and 17 Results in Tissue-Specific Alterations to Lignification of Arabidopsis thaliana Stems. Plant Cell

Tamasloukht B, Wong Quai Lam MS, Martinez Y, Tozo K, Barbier O, Jourda C, Jauneau A, Borderies G, Balzergue S, Renou JP, Huguet S, Martinant JP, Tatout C, Lapierre C, Barrière Y, Goffner D, Pichon M (2011) Characterization of a cinnamoyl-CoA reductase 1 (CCR1) mutant in maize: effects on lignification, fibre development, and global gene expression. Journal of Experimental Botany

Yanhua Yu, Jana Streubel, Sandrine Balzergue, Antony Champion, Jens Boc3, Ralf Koebnik, Jiaxun Fen2, Valérie Verdier and Boris Szurek (2011) Colonization of rice leaf blades by an African strain of Xanthomonas oryzae pv. Oryzae depends on a new TAL effector which induces the rice nodulin-3 Os11N3 gene. Molecular Plant-Microbe Interactions

Jérémie Bazin, Nicolas Langladeb Patrick Vincourtb Sandrine Arribat, Sandrine Balzergue, Hayat El-Maarouf-Bouteau and Christophe Bailly (2011) Targeted mRNA oxidation plays an essential role in sunflower seed dormancy alleviation during dry after-ripening. Plant Cell

Sivasenkar Lingam, Julia Mohrbacher, Tzvetina Brumbarova, Thomas Potuschak, Claudia Fink-Straub, Eddy Blondet, Pascal Genschik and Petra Bauer (2011) Protein interaction of the bHLH transcription factor FIT with EIN3/EIL1 reveals molecular linkage between iron acquisition regulation and ethylene signaling. Plant Cell

Krapp A., Berthomé R, Orsel M, Mercey-Boutet S, Yu A., Castaings L., Elfthieh S., Major H., Renou J.P and Daniel-Vedele F (2011) Arabidopsis roots and shoots show distinct temporal adaptation pattern towards N starvation. Plant Physiology

Annick Dubois, Arnaud Remay, Olivier Raymond, Sandrine Balzergue, Aurélie Chauvet, Marion Maene, Yann Pecrix, Julien Jeauffre, Tatiana Thouroude, Véronique Boltz, Marie-Laure Martin- Magniette, Stéphane Janczarski, Fabrice Legeai, Jean-Pierre Renou, Philippe Vergne, Manuel Le Bris, Fabrice Foucher and Mohammed Bendahmane (2011) Genomic approach to study floral development genes in Rosa sp. PLOS One

Pont C, Murat F, Confolent C, Balzergue S, Salse J (2011) RNA-seq in grain unveils fate of neo- and paleopolyploidization events in bread wheat (Triticum aestivum L.). Genome Biololy

Peltier C., Schmidlin L., Klein E., Taconnat L., Prinsen E., Heintz D., Weyens G., Lefebvre M., Renou J.P. and Gilmer D. (2011) Expression of the Beet necrotic yellow vein virus p25 protein induces hormonal changes and a root branching phenotype on Arabidopsis thaliana. Transgenic Research

Renault H., El Amrani A., Yu A., Renou J.P., Mouille G., Palauqui J.C., Bouchereau A. & Deleu C. (2011) GABA accumulation causes cell elongation defects and a decrease in expression of genes encoding secreted and cell wall-related proteins in Arabidopsis thaliana. Plant Cell Physiology

Cheminant S, Wild M, Bouvier F, Pelletier S, Renou JP, Erhardt M, Hayes S, Terry MJ, Genschik P, Achard P (2011) DELLAs regulate chlorophyll and carotenoid biosynthesis to prevent photooxidative damage during seedling deetiolation in Arabidopsis. Plant Cell

Bauer P, Blondet E (2011) Transcriptome analysis of ein3 eil1 mutants in response to iron deficiency. Plant Signaling & Behaviour

2010

Jay F, Renou JP, Voinnet O, Navarro L. (2010) Biotic Stress-Associated microRNAs: Identification, Detection, Regulation, and Functional Analysis. Methods in Molecular Biology

Krugman T, Chagué V, Peleg Z, Balzergue S, Just J, Korol AB, Nevo E, Saranga Y, Chalhoub B, Fahima T (2010) Multilevel regulation and signalling processes associated with adaptation to terminal drought in wild emmer wheat. Functional & Integrative Genomics

Ranocha P, Denancé N, Vanholme R, Freydier A, Martinez Y, Hoffmann L, Köhler L, Pouzet C, Renou JP, Sundberg B, Boerjan W, Goffner D. (2010) Walls Are Thin1 (WAT1), an Arabidopsis homolog of Medicago truncatula NODULIN21, is a tonoplast-localized protein required for secondary wall formation in fibers. Plant Journal

Mhamdi A., Hager J., Chaouch S., Queval G., Han Y., Taconnat L., Saindrenan P., Issakidis-Bourguet E., Houda G., Renou J.P. and Noctor G. (2010) Arabidopsis GLUTATHIONE REDUCTASE 1 is required to limit daylength-dependent H2O2-triggered cell death and enable appropriate gene expression through both salicylic acid and jasmonic acid signaling pathways. Plant Physiology

Chadi S, Young R, Le Guillou S, Tilly G, Bitton F, Martin-Magniette ML, Soubigou-Taconnat L, Balzergue S, Vilotte M, Peyre C, Passet B, Beringue V, Renou JP, Le Provost F, Laude H, Vilotte JL (2010) Brain transcriptional stability upon prion protein-encoding gene invalidation in zygotic or adult mouse. BMC-Genomics

Chagué V, Just J, Mestiri I, Balzergue S, Tanguy AM, Huneau C, Huteau V, Belcram H, Coriton O, Jahier J, Chalhoub B (2010) Genome-wide gene expression changes in genetically stable synthetic and natural wheat allohexaploids. New Phytologist

Quraishi UM, Murat F, Abrouk M, Pont C, Confolent C, Oury FX, Ward J, Boros D, Gebruers K, Delcour JA, Courtin CM, Bedo Z, Saulnier L, Guillon F, Balzergue S, Shewry PR, Feuillet C, Charmet G, Salse J (2010) Combined meta-genomics analyses unravel candidate genes for the grain dietary fiber content in bread wheat (Triticum aestivum L.). Functional & Integrative Genomics

Pelletier S., Van Orden J., Wolf S., Vissenberg K., Delacourt J., Ndong Y.A., Pelloux J., Bischoff V., Urbian A., Mouille G., Lemonnier G., Renou J.P., Hofte H. (2010) A role for pectin de-methylesterification in a developmentally regulated growth acceleration in dark-grown Arabidopsis hypocotyls. New Phytologist

Cohen D, Bogeat-Triboulot MB, Tisserant E, Balzergue S, Martin-Magniette ML, Lelandais G, Ningre N, Renou JP, Tamby JPh, Le Thiec D, Hummel I (2010) Comparative transcriptomics of drought responses in Populus: a meta-analysis of genome-wide expression profiling in mature leaves and root apices across two genotypes. BMC Genomics

Frei N., Muller P., Jammes F., Kizis D., Leung J., Perrot-Rechennman C. and Bianchi. M.W. (2010) The RNA binding protein Tudor-SN is essential for stress tolerance and stabilizes levels of stress-responsive mRNAs encoding secreted proteins in Arabidopsis. Plant Cell

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2009

Bashandy T, Taconnat L, Renou JP, Meyer Y, Reichheld JP (2009) Accumulation of Flavonoids in an ntra ntrb Mutant Leads to Tolerance to UV-C. Molecular Plant

Matakiadis T, Alboresi A, Jikumaru Y, Tatematsu K, Pichon O, Renou JP, Kamiya Y, Nambara E, Truong HN (2009) The Arabidopsis Abscisic Acid Catabolic Gene CYP707A2 Plays a Key Role in Nitrate Control of Seed Dormancy. Plant Physiology

Pitzschke A., Djamei A., Bitton F. and Hirt H. (2009) Major Role of the MEKK1–MKK1/2–MPK4 Pathway in ROS Signalling. Molecular Plant

Minic Z, Jamet E, San-Clemente H, Pelletier S, Renou JP, Rihouey C, Okinyo DP, Proux C, Lerouge P, Jouanin L. (2009) Transcriptomic analysis of Arabidopsis developing stems: a close-up on cell wall genes. BMC Plant Biology

Besson-Bard A., Gravot A., Richaud P., Auroy P., Gaymard F., Taconnat L., Renou J.P., Pugin A. and Wendehenne D. (2009) Nitric oxide contributes to cadmium toxicity in Arabidopsis by promoting cadmium accumulation in roots and by up-regulating genes related to iron uptake. Plant Physiology

Krinke O., Flemr M., Vergnolle C., Collin S., Renou J.P., Taconnat L., Yu A., Burketová L., Valentová O., Zachowski A. and Ruelland E. (2009 Phospholipase D activation is an early component of the salicylic acid signaling pathway in Arabidopsis thaliana cell suspensions. Plant Physiology

Elis S, Blesbois E, Couty I, Balzergue S, Martin-Magniette ML, Batellier F, Govoroun MS. (2009) Identification of germinal disk region derived genes potentially involved in hen fertility. Molecular Reproduction & Development

Mainguet S., Gakière B., Majira A., Pelletier S., Bringel F., Guérard F., Caboche M., Berthomé R. and Renou J.P. (2009) Uracil Salvage is Necessary for Early Arabidopsis Development. Plant Journal

Meng P.H., Raynaud C., Blanchet S., Massoud K., Domenichini S., Henry Y., Soubigou-Taconnat L., Lelarge-Trouverie C., Saindrenan P., Tcherkez G., Renou J.P. and Bergounioux C. (2009) Crosstalks between myo-inositol metabolism, programmed cell death and basal immunity in Arabidopsis. PLoS One

Jamet E., Roujol D., San-Clemente H., Irshad M., Soubigou-Taconnat L, Renou JP & Pont-Lezica R. (2009) Cell wall biogenesis of Arabidopsis thaliana elongating cells:transcriptomics complements proteomics. BMC Genomics

Castaings L, Camargo A, Pocholle D, Gaudon V, Texier Y, Boutet-Mercey S, Taconnat L, Renou JP, Daniel-Vedele F, Fernandez E, Meyer C, Krapp A. (2009) The nodule inception-like protein 7 modulates nitrate sensing and metabolism in Arabidopsis. Plant Journal

2008

Cartriaux F., Contesto C., Gallou A., Desbrosses G., Taconnat L., Renou J.P. and Touraine B. (2008) Simultaneous interaction of Arabidopsis thaliana with Bradyrhizobium sp. ORS278 and Pseudomonas syringae pv tomato DC3000 leads to complex transcriptome changes. Molecular Plant-Microbe Interactions

Ruffel S., Freixes S., Balzergue S., Tillard P., Jeudy C., Martin-Magniette M.L., van der Merwe M.J., Kakar K., Gouzy J., Fernie A.R., Udvardi M., Salon C., Gojon A., Lepetit M. (2008) Systemic signaling of the plant N status triggers specific transcriptome responses depending on the N source in Medicago truncatula. Plant Physiology

Cossegal M., Chambrier P., Mbelo S., Balzergue S., Martin-Magniette M.L., Moing A., Deborde C., Guyon V., Perez P., Rogowsky P. (2008) Transcriptional and metabolic adjustments in AGPase deficient bt2 maize kernels. Plant Physiology

Elis S., Batellier F., Couty I., Balzergue S., Martin-Magniette M.L., Monget P., Blesbois E. and Govoroun M.S. (2008) Search for the genes involved in oocyte maturation and early embryo development in the hen. BMC Genomics

Chávez Montes R.A., Ranocha P., Martinez Y., Minic Z., Jouanin L., Marquis M., Saulnier L., Fulton L.M., Cobbett C.S., Bitton F., Renou J.P. , Jauneau A. and Goffner D. (2008) Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity. Plant Physiology

Achard P., Renou J.P., Berthomé R., Harberd N.P. and Genschik P. (2008) Plant DELLAs restrain growth and promote survival of adversity by reducing the levels of reactive oxygen species. Current Biology

Martin-Magniette M.L., Aubert J., Bar-Hen A., Elftieh S., Magniette F., Renou J.P. and Daudin J.J. (2008) Normalization for triple-target microarray experiments. BMC bioinformatics

Mérigout P., Lelandais M., Bitton F., Renou J.P., Briand X., Meyer C. & Daniel-Vedele F. (2008) Physiological and transcriptomic aspects of urea uptake and assimilation in Arabidopsis plants. Plant Physiology

Benhamed M, Martin-Magniette ML, Taconnat L, Bitton F, Servet C, De Clercq R, De Meyer B, Buysschaert C, Rombauts S, Villarroel R, Aubourg S, Beynon J, Bhalerao RP, Coupland G, Gruissem W, Menke FL, Weisshaar B, Renou JP, Zhou DX & Hilson P. (2008) Genome-scale Arabidopsis promoter array identifies targets of the histone acetyltransferase GCN5. Plant Journal

Depuydt S, Trenkamp S, Fernie AR, Elftieh S, Renou JP, Vuylsteke M, Holsters M, Vereecke D. (2008) An integrated genomics approach to define niche establishment by Rhodococcus fascians. Plant Physiology

Loizeau K., De Brouwer V., Gambonnet B., Yu A., Renou J.P., Van Der Straeten D., E. Lambert W., Rébeillé F. and Ravanel S. (2008) A genome-wide and metabolic analysis determined the adaptation of Arabidopsis cells to folate depletion induced by methotrexate. Plant Physiology

Bouchabke-Coussa O, Quashie ML, Seoane-Redondo J, Fortabat MN, Gery C, Yu A, Linderme D, Trouverie J, Granier F, Teoule E, Durand-Tardif M. (2008) ESKIMO1 is a key gene involved in water economy as well as cold acclimation and salt tolerance. BMC Plant Biology

Gagnot S., Tamby J.Ph., Martin-Magniette M.L., Bitton F., Taconnat L., Balzergue S., Aubourg S., Renou J.P., Lecharny A. and Brunaud V. (2008) CATdb: a public access to Arabidopsis transcriptome data from the URGV-CATMA platform. Nucleic Acid research

2007

Masclaux-Daubresse C., Purdy S., Lemaitre T., Pourtau N., Taconnat L., Renou J.P. & Wingler A. (2007) Genetic variation suggests an interaction between cold acclimation and the metabolic regulation of leaf senescence. Plant Physiology

Ricaud L., Proux C., Renou J.P., Pichon O., Fochesato S., Ortet P., Montane M.H. (2007) ATM-Mediated Transcriptional and Developmental Responses to gamma-rays in Arabidopsis. PLoS ONE

Krinke O., Ruelland E., Valentova O., Vergnolle C., Renou J.P., Taconnat L., Flemr M., Burketova L., Zachowski A. (2007) Phosphatidylinositol 4-kinase Activation Is an Early Response to Salicylic Acid in Arabidopsis Suspension Cells. Plant Physiology

Hematy K., Sado P.E., Van Tuinen A., Rochange S., Desnos T., Balzergue S., Pelletier S., Renou J.P., Hofte H. (2007) A Receptor-like Kinase Mediates the Response of Arabidopsis Cells to the Inhibition of Cellulose Synthesis. Current Biology

Sclep G., Allemeersch J., Liechti R., De Meyer B., Beynon J., Bhalerao R., Moreau Y., Nietfeld W., Renou J.P., Reymond P., Kuiper M.T., Hilson P. (2007) CATMA, a comprehensive genome-scale resource for silencing and transcript profiling of Arabidopsis genes. BMC Bioinformatics

Aubourg S., Martin-Magniette M.L., Brunaud V., Taconnat L., Bitton F., Balzergue S., Jullien P.E., Ingouff M., Thareau V., Schiex T., Lecharny A., Renou J.P. (2007) Analysis of CATMA transcriptome data identifies hundreds of novel functional genes and improves gene models in the Arabidopsis genome. BMC Genomics

Ribot C., Hirsch J., Balzergue S., Tharreau D., Nottéghem J.L., Lebrun M.H., Morel J.B. (2007) Susceptibility of rice to the blast fungus, Magnaporthe grisea. J Plant Physiology

Ramel F, Sulmon C, Cabello-Hurtado F, Taconnat L, Martin-Magniette ML, Renou JP, El Amrani A, Couée I, Gouesbet G. (2007) Genome-wide interacting effects of sucrose and herbicide-mediated stress in Arabidopsis thaliana: novel insights into atrazine toxicity and sucrose-induced tolerance. BMC Genomics

Xu L., Zhao Z., Dong A., Soubigou-Taconnat L., Renou J.P., Steinmetz A. & Shen W.H. (2007) Di- and tri- but not monomethylation on histone H3 lysine 36 marks active transcription of genes involved in flowering time regulation and other processes in Arabidopsis thaliana. Molecular & Cellular Biology

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2006

Abdulrazzak N., Pollet B., Ehlting J., Larsen K., Asnaghi C., Ronseau S., Proux C., Erhardt M., Seltzer V., Renou J.P., Ullmann P., Pauly M., Lapierre C. & Werck-Reichhart D. (2006) A coumaroyl-ester-3-hydroxylase insertion mutant reveals the existence of nonredundant meta-hydroxylation pathways and essential roles for phenolic precursors in cell expansion and plant growth. Plant Physiology

Guyomarch's S., Benhamed M., Lemonnier G., Renou J.P., Zhou D.X. & Delarue M. (2006) MGOUN3: evidence for chromatin-mediated regulation of FLC expression. Journal of Experimental Botany

Ferrario-Mery S., Besin E., Pichon O., Meyer C., Hodges M. (2006) The regulatory PII protein controls arginine biosynthesis in Arabidopsis. FEBS Letter

Herbette S., Taconnat L., Hugouvieux V., Martin-Magniette M.L., Cuine S., Auroy P., Richaud P., Forestier C., Bourguignon J., Renou J.P., Vavasseur A. and Leonhart N. (2006) Genome-wide transcriptome profiling of the early cadmium response of Arabidopsis roots and shoots. Biochimie

Manavella P.A., Arce A.L., Dezar C.A., Bitton F., Renou J.P., Crespi M. & Chan R. (2006) Cross-talk between ethylene and drought signalling pathways is mediated by the sunflower Hahb-4 transcription factor. Plant Journal

Zhu Y., Dong A., Meyer D., Pichon O., Renou J.P., Cao K. & Shen W.H. (2006) Arabidopsis NRP1 and NRP2 encode histone chaperones and are required for maintaining postembryonic root growth. Plant Cell

2005

Dieterle M., Thomann A., Renou J.P., Parmentier Y., Cognat V., Lemonnier G., Müller R., Shen W.-H., Kretsch T. and Genschick P. (2005) Molecular and functional characterization of Arabidopsis Cullin 3A. Plant Journal

Bertrand C., Benhamed M., Li Y.-F., Ayadi M., Lemonnier G., Renou J.P., Delarue M., and Zhou D.-X. (2005) Arabidopsis HAF2 gene encoding TATA-binding protein (TBP)-associated factor TAF1, is required to integrate light signals to regulate gene expression and growth. J. The Journal of Biological Chemistry

Pineau C., Freydier A., Ranocha P., Jauneau A., Turner S., Lemonnier G., Renou J.P., Tarkowski P., Sandberg G., Jouanin L., Sundberg B., Boudet A.M., Goffner D. and Pichon M. (2005) hca: an Arabidopsis mutant exhibiting unusual cambial activity and altered vascular patterning. Plant Journal

Jammes F., Lecomte P., Almeida-Engler J., Bitton F., Martin-Magniette M.L., Renou J.P., Abad P. and Favery B. (2005) Genome-wide expression profiling of the host response to root-knot nematode infection in Arabidopsis. Plant Journal

Vergnolle C., Vaultier M.N., Taconnat L., Renou J.P., Kader J.C., Zachowski A. and Ruelland E. (2005) The cold-induced early activation of phospholipase C and D pathways determine the response of two distinct clusters of genes in Arabidopsis cell suspensions. Plant Physiology

2004

Lurin C., Andres C., Aubourg S., Bellaoui M., Bitton F., Bruyere C., Caboche M., Debast C., Gualberto J., Hoffmann B., Lecharny A., Ret M.L., Martin-Magniette M.L., Mireau H., Peeters N., Renou J.P., Szurek B., Taconnat L., Small I. (2004) Genome-Wide Analysis of Arabidopsis Pentatricopeptide Repeat Proteins Reveals Their Essential Role in Organelle Biogenesis. Plant Cell

Hilson P., Allemeersch J., Altmann T., Aubourg S., Avon A., Beynon .J, Bhalerao R.P., Bitton F., Caboche M., Cannoot B., Chardakov V., Cognet-Holliger C., Colot V., Crowe M., Darimont C., Durinck S., Eickhoff H., de Longevialle A.F., Farmer E.E., Grant M., Kuiper M.T., Lehrach H., Léon C., Leyva A., Lundeberg J., Lurin C., Moreau Y., Nietfeld W., Paz-Ares J., Reymond P., Rouzé P., Sandberg G., Segura M.D., Serizet C., Tabrett A., Taconnat L., Thareau V., Van Hummelen P., Vercruysse S., Vuylsteke M., Weingartner M., Weisbeek P.J., Wirta V., Wittink F.R., Zabeau M., Small I. (2004) Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. Genome Research

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