Publications

2018

  • Lu Y, Xu Q,Liu Y, Yu Y, Cheng ZY, Zhao Y, Zhou DX  (2018) Dynamics and functional interplay of histone lysine butyrylation, crotonylation, and acetylation in rice under starvation and submergence. Genome Biology. https://rdcu.be/7Mk5.
  • Yan W, Chen D, Smaczniak C, EngelhornJ, Liu H, Yang W, Graf A, Carles C, Zhou DX, Kaufmann K (2018) Dynamic recruitment of plant H3K27me3 demethylases mediated by trans  factors. Nature Plants 4 (9):681-689.
  • Zhou C, Wang C, Liu H, Liu Q, Guo Y, Peng T, Zhao Y, Zeng Z, Zhou DX (2018) DNA adenine N6-methylation is functionally complementary to cytosine methylation in the rice genome. Nature Plants 4 (8): 554-563.
  • Tuzet A, Rahantaniana MS, Noctor G (2018) Analyzing the function of catalase and the ascorbate-glutathione pathway in H2O2 processing: Insights from an experimentally constrained kinetic model. Antioxid Redox Signal (in press).
  • Lepiniec L, Devic M, Roscoe TJ, Bouyer D, Zhou DX, Boulard C, Baud S, Dubreucq B (2018) Molecular and epigenetic regulations and functions of the LAFL transcriptional regulators that control seed development. Plant Reproduction 31(3):291-307.
  • Wang T, Xing J, Liu X, Yao Y, Hu Z, Peng H, Xin M, Zhou DX, Zhang Y, Ni Z (2018) GCN5 contributes to stem cuticular wax biosynthesis by histone acetylation of CER3 in Arabidopsis. J Exp Bot 69(12):2911-2922.
  • Tan F, Lu Y, Jiang W, Wu T, Zhang R, Zhao Y, Zhou DX (2018) DDM1 represses noncoding RNA expression and RNA-directed DNA methylation in heterochromatin Plant Physiol. 177(3):1187-1197.
  • Cheng S, Tan F, Lu Y, Liu X, Li T, Yuan W, Zhao Y, Zhou DX (2018) WOX11 recruits a histone H3K27me3 demethylase to promote shoot meristem cell proliferation gene expression in rice. Nucleic Acids Res 46: 2356–2369.

 

2017

  • WeiB, Zhang W, ChaoJ, Zhang T, ZhaoT, NoctorG, Liu Y,HanY (2017) Functional analysis of the role of hydrogen sulfide in the regulation of dark-induced leaf senescence in Arabidopsis. Sci Rep 7:2615.
  • Rahantaniana MS, Li S, Chatel-Innocenti G, Tuzet A, Mhamdi A, Vanacker H, Noctor G (2017) Glutathione oxidation in response to intracellular H2O2: Key but overlapping roles for dehydroascorbate reductases. Plant Signal Behav 12:e1356531.
  • Rahantaniana MS, Li S, Chatel-Innocenti G, Tuzet A, Issakidis-Bourguet E, Mhamdi A, Noctor G (2017) Cytosolic and chloroplastic DHARs cooperate in the induction of the salicylic acid pathway by oxidative stress. Plant Physiol 174: 956-971.
  • Liu X, Wei W, Su L, Xiong Z, Zhou M, Zheng Y, Zhou DX (2017) Histone deacetylase AtSRT1 regulates metabolic flux and stress-response in Arabidopsis. Mol Plant 10: 1510-1522.
  • Zhang H, Zhao Y, Zhou DX (2017) Rice NAD+-dependent histone deacetylase OsSRT1 represses glycolysis and regulates the moonlighting function of GAPDH as a transcriptional activator of glycolytic genes. Nucleic Acids Res 45: 12241-12255.
  • Noctor G, Reichheld JP, Foyer CH (2017) Seminars in Cell & Developmental Biology Jul 18. pii: S1084-9521(17)30246-X. doi: 10.1016/j.semcdb.2017.07.013
  • Noctor G, Mhamdi A (2017) Climate change, CO2, and defense: the metabolic, redox, and signaling perspectives. Trends Plant Sci 22: 857-870.
  • Mhamdi A, Kerchev PI, Willems P, Noctor G, Van Breusegem F (2017) Measurement of transcripts associated with photorespiration and related redox signaling. Methods Mol Biol. 1653: 17-29.
  • Foyer CH, Ruban A, Noctor G (2017) Viewing oxidative stress through the lens of oxidative signalling rather than damage. Biochem J 474: 877-883.
  • Zhou S, Jiang W, Long F, Cheng S, Yang W, Zhao Y, Zhou DX (2017) Rice homeodomain protein WOX11 recruits a histone acetyltransferase complex to establish programs of cell proliferation of crown root meristem. Plant Cell 29: 1088-1104. doi: 10.1105/tpc.16.00908. Epub 2017 May 9.
  • Audonnet L, Shen Y, Zhou DX (2017) JMJ24 antagonizes histone H3K9 demethylase IBM1/JMJ25 function and interacts with RNAi pathways for gene silencing. Gene Expr Patterns 25-26: 1-7. doi: 10.1016/j.gep.2017.04.001.
  • Jiang W, Zhou S, Zhang Q, Song H, Zhou DX, Zhao Y (2017) Transcriptional regulatory network of WOX11 involved in the control of crown root development, cytokinin signals, and redox in rice. J Exp Bot 68: 2787-2798. doi: 10.1093/jxb/erx153.
  • Thormählen I, Zupok A, Rescher J, Leger J, Weissenberger S, Groysman J, Orwat A, Chatel-Innocenti G, Issakidis-Bourguet E, Armbruster U, Geigenberger P (2017) Thioredoxins play a crucial role in dynamic acclimation of photosynthesis in fluctuating light. Mol Plant 10: 168-182.

 

2016

  • Wang T, Xing J, Liu X, Liu Z, Yao Y, Hu Z, Peng H, Xin M, Zhou DX, Zhang Y, Ni Z (2016) Histone Acetyltransferase GENERAL CONTROL NON-REPRESSED PROTEIN 5 (GCN5) affects the fatty acid composition of Arabidopsis thaliana seeds by acetylating FATTY ACID DESATURASE3 (FAD3). Plant J 88: 794-808.
  • Fang C, Zhang H, Wan J, Wu Y, Jin C, Chen W, Wang S, Wang W, Zhang H, Zhang P, Zhang F, Li K, Qu L, Liu X, Zhou DX, Luo J (2016) Control of leaf senescence by a MeOH-Jasmonates cascade that is epigenetically regulated by OsSRT1 in rice. Mol Plant 9: 1366-1378.
  • Mhamdi A, Noctor G (2016) High CO2 primes plant biotic stress responses through redox-linked pathways. Plant Physiol 172: 929-942.
  • Zhou S, Liu X, Zhou C, Zhou Q, Zhao Y, Li G, Zhou DX (2016) Non-CG methylation interacts with PRC2-mediated H3K27me3 for developmental gene repression. Plant Physiol 172: 1131-1141.
  • Tan F, Zhou C, Zhou Q, Zhou S, Yang W, Zhao Y, Li G, Zhou D-X (2016) Analysis of chromatin regulators reveals specific features of rice DNA methylation pathways. Plant Physiol 171:2041-54.
  • Shen Y, Issakidis-Bourguet E, Zhou DX (2016) Perspectives on interaction between metabolism, redox, and epigenetics in plants. J Exp Bot 67: 5291-5300.
  • Noctor G, Foyer CH (2016) Intracellular redox compartmentation and ROS-related communication in regulation and signaling. Plant Physiol 171: 1581-1592.
  • Noctor G, Mhamdi A, Foyer CH (2016) Oxidative stress and antioxidative systems: recipes for successful data collection and interpretation. Plant Cell Environ 39: 1140-1160.
  • Foyer CH, Noctor G (2016) Stress-triggered redox signalling: What’s in pROSpect? Plant Cell Environ 39: 951-964.
  • Dietz KJ, Mittler R, Noctor G (2016) Recent progress in understanding the role of reactive oxygen species in plant cell signaling. Plant Physiol 171: 1535-1539.
  • Zhang H, Lu Y, Zhao Y, Zhou DX (2016) OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression. Plant Sci 248: 28-36.
  • Zheng Y, Ding Y, Sun X, Xie S, Wang D, Liu X, Su L, Wei W, Pan L, Zhou DX (2016) Histone deacetylase HDA9 negatively regulates salt and drought stress responsiveness in Arabidopsis. J Exp Bot 67: 1703-13.
  • Waszczak C, Kerchev PI, Mühlenbock P, Hoeberichts FA, Van Der Kelen K, Mhamdi A, Willems P, Denecker J, Kumpf RP, Noctor G, Messens J, Van Breusegem F (2016) SHORT-ROOT deficiency alleviates the cell death phenotype of the Arabidopsis catalase2 mutant under photorespiration-promoting conditions. Plant Cell 28: 1844-1859.
  • Cheng S, Zhou DX, Zhao Y (2016) WUSCHEL-related homeobox gene WOX11 increases drought resistance by controlling rice root hair formation and root system development. Plant Signaling & Behavior 11: e1130198.
  • Willems P, Mhamdi A, Stael S, Storme V, Kerchev P, Noctor G, Gevaert K, Van Breusegem F (2016) The ROS wheel: refining ROS transcriptional footprints. Plant Physiol 171: 1720-1733.

 

2015

  • Hu Z, Song N, Zheng M, Liu X, Liu Z, Xing J, Ma J, Guo W, Yao Y, Peng H, Xin M, Zhou DX, Ni Z, Sun Q (2015) Histone acetyltransferase GCN5 is essential for heat stress responsive genes activation and thermotolerance in Arabidopsis. Plant J 84: 1178-1191.
  • Xing J, Wang T, Liu Z, Xu J, Yao Y, Hu Z, Peng H, Xin M, Yu F, Zhou DX, Ni Z (2015) GCN5-mediated histone acetylation of FRD3 contributes to iron homeostasis in Arabidopsis thaliana. Plant Physiol 168: 1309-20Zhu N, Cheng S, Liu X, Du H, Dai M, Zhou DX, Yang W, Zhao Y (2015) The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice. Plant Sci 236, 146–156.
  • Mhamdi A, Noctor G (2015) Analysis of the roles of the Arabidopsis peroxisomal isocitrate dehydrogenase in leaf metabolism and oxidative stress. Environ Exp Bot 115: 22-29.
  • Shen Y, Devic M, Lepiniec L, Zhou DX (2015) Arabidopsis Chromodomain, Helicase and DNA-binding Protein CHD1 is involved in establishing active chromatin state of seed maturation genes. Plant Biotech J 13: 811-20.
  • Chen X, Liu X, Zhao Y, Zhou DX (2015) Histone H3K4me3 and H3K27me3 regulatory genes control stable transmission of an epimutation in rice. Sci Rep 5:13251.
  • Zhao Y, Cheng S, Song Y, Huang Y, Zhou S, Liu X, Zhou DX (2015) Interaction between OsERF3 and WOX11 promotes crown root development by regulating gene expression involved in cytokinin signaling. Plant Cell 27: 2469–2483.
  • Liu X, Zhou S, Wang W, Ye Y, Zhao Y, Xu Q, Zhou C, Tan F, Cheng S, Zhou DX (2015) Regulation of histone methylation and reprogramming of gene expression in rice inflorescence meristem. Plant Cell 27:1428-1444.
  • Noctor G (2015) Keeping a cool head: gene networks underlying chilling-induced male sterility in rice. Plant Cell Environ 38: 1252–1254 (invited perspective).
  • Noctor G, Lelarge-Trouverie C, Mhamdi A (2015) The metabolomics of oxidative stress. Phytochemistry 112: 33-53.
  • Shen Y, Wei W, Zhou DX (2015) Histone acetylation enzymes coordinate metabolism and gene expression. Trends Plant Sci 20: 614-621.
  • Foyer CH, Noctor G (2015) Editorial: Defining robust redox signalling within the context of the plant cell. Plant Cell Environ 38: 239.
  • Noctor G (2015) Lighting the fuse on toxic TNT. An enzyme that helps control reactive oxidants sensitizes plants to TNT pollution. Science 349: 1052-1053.