Publications

2022

Mejias, J., Chen, Y.P., Bazin, J., Truong, N-M., Mulet, K., Noureddine, Y., Jaubert-Possamai, S., Ranty-Roby, S., Soulé, S., Abad, P., Crespi, M. D., Favery, B. and Quentin, M. (2022) Silencing the conserved small nuclear ribonucleoprotein SmD1 target gene alters susceptibility to root-knot nematodes in plants. Plant Physiol. 2022 Apr 6:kiac155. doi: 10.1093/plphys/kiac155.

Crespi M, Ariel F. Non-B DNA structures emerging from plant genomes. Trends in Plant Sci. 2022 Mar 15:S1360-1385(22)00057-7. doi: 10.1016/j.tplants.2022.03.004.

The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA. Roulé T, Christ A, Hussain N, Huang Y, Hartmann C, Benhamed M, Gutierrez-Marcos J, Ariel F, Crespi M*, Blein* T. Mol Plant. 2022 May 2;15(5):840-856. doi: 10.1016/j.molp.2022.02.007. Epub 2022 Feb 9 (*co-corresponding authors)

Regulatory long non-coding RNAs in root growth and development. Roulé T, Crespi M and Blein T. Biochem Soc Trans. UK 2022 Feb 28;50(1):403-412. doi: 10.1042/BST20210743. PMID: 34940811 Review.

The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses Butt H, Bazin J,Kasavajhala V S K, Prasad Nourelislam Awad, Crespi M, A. S. N. Reddy, Mahfouz M. Cells (mdpi) 2022, 11(11), 1796; https://doi.org/10.3390/cells11111796

2021

The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold. Moison M, Pacheco JM, Lucero L, Fonouni-Farde C, Rodríguez-Melo J, Mansilla N, Christ A, Bazin J, Benhamed M, Ibañez F, Crespi M, Estevez JM, Ariel F. Mol Plant 2021 14(6):937-948. doi: 10.1016/j.molp.2021.03.008.

ChronoRoot: High-throughput phenotyping by deep segmentation networks revealsnovel temporal parameters of plant root system architect Gaggion N, Ariel F, Daric V, Lambert E, Legendre S, Roulé T, Camoirano A, Milone D, Crespi M, Blein T*, Ferrante E* (2021) GIGASCIENCE, Vol. 10 (7), giab052, https://doi.org/10.1093/gigascience/giab052.

Polycomb-dependent differential chromatin compartmentalization determines gene coregulation in Arabidopsis. Huang Y, Sicar S, Ramirez-Prado JS, Manza-Mianza D, Antunez-Sanchez J, Brik-Chaouche R, Rodriguez-Granados NY, An J, Bergounioux C, Mahfouz MM, Hirt H, Crespi M, Concia L, Barneche F, Amiard S, Probst AV, Gutierrez-Marcos J, Ariel F, Raynaud C, Latrasse D, Benhamed M. Genome Res. 2021 31(7):1230-44. doi: 10.1101/gr.273771.120.

Overlapping roles of spliceosomal components SF3B1 and PHF5A in rice splicing regulation Butt H, Bazin J, Alshareef S, Eid A, Benhamed M, Reddy ASN, Crespi M, Mahfouz MM. Commun. Biology 2021 (Nature eds) 4(1):529. doi: 10.1038/s42003-021-02051-y.

Plant Long Noncoding RNAs: New Players in the Field of Post-Transcriptional Regulations. Fonouni-Farde C, Ariel F, Crespi M. Noncoding RNA. 2021 7(1):12. doi: 10.3390/ncrna7010012

Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation. Chialva C, Blein T, Crespi M, and Lijavetzky D. Scientific Reports (2021) 11(1):4093. doi: 10.1038/s41598-021-83514-4.

The Root-Knot Nematode Effector MiEFF18 interacts with the Plant Core Spliceosomal Protein SmD1 Required for Giant Cell Formation Mejias J, Bazin J, Truong N, Chen Y, Marteu1 N, Bouteiller N, Sawa S, Crespi M, Vaucheret H, Abad P, Favery B and Quentin M. New Phytol. (2021) 229(6):3408-3423. doi: 10.1111/nph.17089.

2020

The Arabidopsis lncRNA ASCO modulates the transcriptome through interaction with splicing factors Rigo R*, Bazin J*, Romero-Barrios N, Moison M, Lucero L, Christ A, Benhamed M, Blein T, Huguet S, Charon C, Crespi M** and Ariel F** (*co-first authors, **co-corresponding authors), EMBO reports (2020) 21(5):e48977. doi: 10.15252/embr.201948977.

Plant transcription links environmental cues and phenotypic plasticity. Crespi M. Transcription (2020)11(3-4):97-99. doi: 10.1080/21541264.2020. 1837498.

Long noncoding RNAs shape transcription in plants. Lucero L, Fonouni-Farde C, Crespi M, Ariel F. Transcription (2020) 11(3-4):160-171. doi: 10.1080/21541264.2020.1764312.

GCN5 modulates salicylic acid homeostasis by regulating H3K14ac levels at the 5' and 3' ends of its target genes. Kim S, Piquerez SJM, Ramirez-Prado JS, Mastorakis E, Veluchamy A, Latrasse D, Manza-Mianza D, Brik-Chaouche R, Huang Y, Rodriguez-Granados NY, Concia L, Blein T, Citerne S, Bendahmane A, Bergounioux C, Crespi M, Mahfouz MM, Raynaud C, Hirt H, Ntoukakis V, Benhamed M. Nucleic Acids Res. (2020)48(11):5953-5966. doi: 10.1093/nar/gkaa369.

To keep or not to keep: mRNA stability and translatability in root nodule symbiosis Zanetti ME, Blanco F., Reynoso M. and Crespi M, Curr. Opinion in Plant Biol. (2020) 56:109-117. doi: 10.1016/j.pbi.2020.04.012.

Role of MPK4 in pathogen-associated molecular pattern-triggered alternative splicing in Arabidopsis Bazin J., Mariappan K., Jiang Y., Blein T., Voelz R., Crespi M. and Hirt H. PLOS Pathogens (2020)16(4):e1008401. doi: 10.1371/journal.ppat.1008401.

Wheat chromatin architecture is organized in genome territories and transcription factories Concia L, Veluchamy A, Ramirez-Prado JS, Martin-Ramirez A, Huang Y, Perez M, Domenichini S, Rodriguez-Granados N, Soonkap N, Blein T, Duncan S, Pichot C, Manza-Mianza D, Juery C, Paux E, Moore G, Hirt H, Bergounioux C, Crespi M, Mahfouz M, Bendahmane A, Liu C, Hall A, Raynaud C, Latrasse D & BENHAMED M. Genome Biology (2020) 21(1):104. doi: 10.1186/s13059-020-01998-1.

Evolution of the small family of alternative splicing modulators Nuclear Speckle RNA-binding proteins (NSRs) in plants Lucero L., Bazin J., Rodriguez Melo J., Ibañez F., Crespi M.*, Ariel F.* (*co-corresponding authors) Genes (2020), 11, 207. doi: 10.3390/genes11020207.

High-quality genome sequence of white lupin provides insight into soil exploration and seed quality Hufnagel B., Marques A., Soriano A., Marquès L., Divol F., Doumas P., Sallet E., Mancinotti D., Carrere S., Marande W., Arribat S., Keller J., Huneau C., Blein T., Aime D., Laguerre M., Taylor J., Schubert V., Nelson M., Geu-Flores F., Crespi M., Gallardo-Guerrero K., Delaux P-M, Salse J., Berges H., Guyot R., Gouzy J. & Péret B. Nature Communications (2020) 11(1):492. doi: 10.1038/s41467-019-14197-9.

R-loop mediated trans-action of the APOLO long noncoding RNA Ariel F, Lucero L, Christ A, Mammarella MF, Jegu T, Veluchamy A, Mariappan K, Latrasse D, Blein T, Liu C, Benhamed M and Crespi M. Molecular Cell (2020)77(5):1055-1065.e4. doi: 10.1016/j.molcel.2019.12.015.

Landscape of the Noncoding Transcriptome Response of Two Arabidopsis Ecotypes to Phosphate Starvation Blein T, Balzergue C, Roulé T, Gabriel M, Scalisi L, François T, Sorin C, Christ A, Godon C, Delannoy E, Martin-Magniette ML, Nussaume L, Hartmann C, Gautheret D, Desnos T, Crespi M. Plant Physiol. 2020 183(3):1058-1072. doi: 10.1104/pp.20.00446.

2019

Alternative Splicing in the Regulation of Plant-Microbe Interactions. Rigo R, Bazin J, Crespi M, Charon C. (2019) Plant Cell Physiol. pii: pcz086. doi: 10.1093/pcp/pcz086.

Heterocyst Formation under the Control of a Cell-Specific Antisense RNA. Kirilovsky D, Crespi M. (2019) Plant Cell Physiol. 60(8):1631-1632. doi: 10.1093/pcp/pcz140.

RNA-Mediated Plant Behavior Ohtani M, Kurihara Y, Seki M, Crespi M (2019) Plant Cell Physiol. 60(9):1893-1896. doi: 10.1093/pcp/pcz168.

CRISPR directed evolution of the spliceosome for resistance to splicing inhibitors. Butt H, Eid A, Momin AA, Bazin J, Crespi M, Arold ST, Mahfouz MM. (2019) Genome Biol. 20(1):73. doi: 10.1186/s13059-019-1680-9.

Assessing the response of small RNA populations to allopolyploidy using resynthesized Brassica napus allotetraploids P MARTINEZ PALACIOS, MP JACQUEMOT, M TAPIE, A ROUSSELET, M FALQUE, A LLOYD, E JENCZEWSKI, G LASSALLE, A-M CHEVRE, C LELANDAIS, M CRESPI, P BRABANT, J JOETS and K ALIX (2019) Molecular Biology and Evolution, 36(4):709-726. doi: 10.1093/molbev/msz007.

2018

Whole-genome landscape of Medicago truncatula symbiotic genes Yann Pecrix, Spencer Staton, Erika Sallet, Christine Lelandais-Brière, Sandra Moreau, Sebastien Carrere, Thomas Blein, Marie-Françoise Jardinaud, David Latrasse, Mohamed Zouine, Margot Zahm, Jonathan Kreplak, Baptiste Mayjonade, Carine Satgé, Magali Perez, Stéphane Cauet, William Marande, Céline Chantry-Darmon, Céline Lopez-Roques, Olivier Bouchez, Aurélie Bérard, Frédéric Debellé, Stéphane Muños, Abdelhafid Bendahmane, Hélène Bergès, Andreas Niebel, Julia Buitink, Florian Frugier, Moussa Benhamed, Martin Crespi, Jérôme Gouzy, and Pascal Gamas (2018) Nature Plants. 4(12):1017-1025. doi: 10.1038/s41477-018-0286-7.

Circular RNAs in Plants. Lai X, Bazin J, Webb S, Crespi M, Zubieta C, Conn SJ. (2018)Adv Exp Med Biol. 1087:329-343. doi: 10.1007/978-981-13-1426-1_26.

Nuclear Speckle RNA binding proteins remodel alternative splicing and the non-coding Arabidopsis transcriptome to regulate a cross-talk between auxin and immune responses Bazin J., Romero N., Rigo R., Charon C., Blein T., Ariel F. and Crespi M. (2018)Frontiers Plant Sci. 9:1209. doi: 10.3389/fpls.2018.01209.

Splicing regulation by long noncoding RNAs. Romero-Barrios N, Legascue MF, Benhamed M, Ariel F, Crespi M. (2018) Nucleic Acids Res. 46(5):2169-2184 doi: 10.1093/nar/gky095.

Thermopriming Triggers Splicing Memory in Arabidopsis.Ling Y, Serrano N, Gao G, Atia M, Mokhtar M, Woo YH, Bazin J, Veluchamy A, Benhamed M, Crespi M, Gehring C, Reddy ASN, Mahfouz MM. (2018)J Exp Bot. 69(10):2659-2675. doi: 10.1093/jxb/ery062.

Arabidopsis Heat Shock Transcription FactorA1b regulates multiple developmental genes under benign and stress conditions Albihlal W., Irabonosi O., Blein T., Persad P., Chernukhin I., CrespiM., Bechtold U. and Mullineaux P., J. Exp Bot., (2018), 69(11):2847-2862.

The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility Jégu T; Veluchamy A; Ramirez-Prado JS; Rizzi-Paillet C; Lhomme A; Latrasse D; Vicaire S; Legras S; Jost B; Rougée M; Barneche F; Bergounioux C; Crespi M; Hirt H; Raynaud C; Benhamed M. Genome Biology (2018), 18(1):114. doi: 10.1186/s13059-017-1246-7.

2018

Nuclear Speckle RNA binding proteins remodel alternative splicing and the non-coding Arabidopsis transcriptome to regulate a cross-talk between auxin and immune responses.Bazin J., Romero N., Rigo R., Charon C., Blein T., Ariel F. and Crespi M.; (2018) Front Plant Sci. 9:1209. doi: 10.3389/fpls.2018.01209.
Splicing regulation by long noncoding RNAs.Romero-Barrios N, Legascue MF, Benhamed M, Ariel F, Crespi M. (2018) Nucleic Acids Res. 46(5):2169-2184, doi: 10.1093/nar/gky095.
Thermopriming Triggers Splicing Memory in Arabidopsis.Ling Y, Serrano N, Gao G, Atia M, Mokhtar M, Woo YH, Bazin J, Veluchamy A, Benhamed M, Crespi M, Gehring C, Reddy ASN, Mahfouz MM. (2018) J Exp Bot. 69(10):2659-2675. doi: 10.1093/jxb/ery062.
Arabidopsis Heat Shock Transcription FactorA1b regulates multiple developmental genes under benign and stress conditions.Albihlal W., Irabonosi O., Blein T., Persad P., Chernukhin I., CrespiM., Bechtold U. and Mullineaux P.,(2018) J. Exp Bot. 69(11):2847-2862. doi: 10.1093/jxb/ery142.

2017

Global analysis of ribosome-associated non-coding RNAs unveils new modes of translational regulation. Bazin J, BaerenfallerK, GosaiS, GregoryB, CrespiM and Bailey-Serres J. PNAS (2017),114(46):E10018-E10027. doi: 10.1073/pnas.1708433114.
Antisense movement on the clock.Bazin J, Crespi M. (2017) New Phytol. 2017, 216(3):626-628. doi: 10.1111/nph.14769.
The microRNA390/TAS3 pathway controls symbiotic nodulation and lateral root growth in Medicago truncatula. Hobecker KV, M Reynoso, P Bustos Sanmamed, J Wen, KS Mysore, M Crespi, F Blanco, ME Zanetti. (2017) Plant Physiology 174(4):2469-2486. doi: 10.1104/pp.17.00464.
The Arabidopsis SWI/SNF protein BAF60 mediates seedling growth control by modulating DNA accessibility. Jégu T; Veluchamy A; Ramirez-Prado JS; Rizzi-Paillet C; Lhomme A; Latrasse D; Vicaire S; Legras S; Jost B; Rougée M; Barneche F; Bergounioux C; Crespi M; Hirt H; Raynaud C; Benhamed M. (2018) Genome Biology 18(1):114. doi: 10.1186/s13059-017-1246-7.
The sunflower genome provides insights into oil metabolism, flowering and Asterid evolution. Hélène Badouin, Jérôme Gouzy, Christopher J. Grassa1, Florent Murat, S. Evan Staton, Ludovic Cottret, Christine Lelandais-Brière, Gregory L. Owens, Sébastien Carrère, Baptiste Mayjonade, Ludovic Legrand, Navdeep Gill,Nolan C. Kane, John E. Bowers, Sariel Hubner, Arnaud Bellec, Aurélie Bérard, Hélène Bergès, Nicolas Blanchet,Marie-Claude Boniface, Dominique Brunel, Olivier Catrice, Nadia Chaidir, Clotilde Claudel, Cécile Donnadieu,Thomas Faraut, Ghislain Fievet, Nicolas Helmstetter, Matthew King, Steven J. Knapp, Zhao Lai,Marie-Christine Le Paslier, Yannick Lippi, Lolita Lorenzon, Jennifer R. Mandel, Gwenola Marage, Gwenaëlle Marchand, Elodie Marquand, Emmanuelle Bret-Mestries, Evan Morien, Savitri Nambeesan, Thuy Nguyen,Prune Pegot-Espagnet, Nicolas Pouilly, Frances Raftis, Erika Sallet, Thomas Schiex, Justine Thomas, Céline Vandecasteele, Didier Varès, Felicity Vear, Sonia Vautrin, Martin Crespi, Brigitte Mangin, John M. Burke, Jérôme Salse, Stéphane Muños, Patrick Vincourt, Loren H. Rieseberg & Nicolas B. Langlade. (2017) Nature 546(7656):148-152, doi:10.1038/nature22380.
Alternative splicing: The lord of the rings. Federico Ariel and Martin Crespi; News and views (2017) Nature Plants, 3, 17065, DOI: 10.1038/nplants.2017.65.
TMV induces RNA decay pathways to modulate gene silencing and disease symptoms. Conti, G.; Zavallo, D.; Venturuzzi, A.; Rodriguez, M.; Crespi, M.; Asurmendi, S. (2017) Plant J. 89(1):73-84. doi: 10.1111/tpj.13323.

2016

One Gene, Many Proteins: Mapping Cell-Specific Alternative Splicing in Plants. Ranjan Swarup, Martin Crespi and Malcolm J. Bennett,(2016) Developmental Cell Preview 39(4):383-385, doi: 10.1016/j.devcel.2016.11.002.
Small RNA profiles from soybean primary root tips in response to water deficit identifies a critical role for miRNAs in adaptation to stress. Zheng Y, Hivrale V, Valliyodan B, Lelandais-Brière C,Farmer AD,. May GD, Crespi M, Nguyen HT and Sunkar R. (2016). BMC Systems Biology, 10(Suppl 5):126. doi: 10.1186/s12918-016-0374-0.

LHP1 regulates H3K27me3 spreading and shapes the three-dimensional conformation of the Arabidopsis genome. Veluchamy A, Jégu T, Ariel F, Latrasse D, Mariappan K.G, Kim S.K,. Bendahmane A, Crespi M, Hirt H, Bergounioux C, Raynaud C and Benhamed M. (2016). PLOS One, 11(7):e0158936. doi: 10.1371/journal.pone.
Arabidopsis CLAVATA1 and CLAVATA2 receptors contribute to Ralstonia solanacearum pathogenicity through a miR169-dependent pathway.Hanemian M, Barlet X, Sorin C, Yadeta K.A, Keller H, Favery B, Simon R, Thomma P.H.J, Hartmann C, Crespi M, Marco Y, Tremousaygue D and L. Deslandes. (2016). New Phytol., 211(2):502-15. doi: 10.1111/nph.
The nuclear ribonucleoprotein SmD1 interplays with splicing, RNA quality control and post-transcriptional gene silencing in Arabidopsis. Elvira-Matelot E, Bardou F, Ariel F, Jauvion V, Bouteiller N, Le Masson I, Cao J, Crespi M and Vaucheret H. (2016). The Plant Cell, 28(2), 426-38. doi: 10.1105/tpc.15.01045.
Put your 3D glasses on: plant chromatin is on show. N. Y. Rodriguez-Granados, J. S. Ramirez-Prado, A. Veluchamy, D. Latrasse, C. Raynaud, M. Crespi, F. Ariel and M. Benhamed. J. Exp Bot. (2016) 67(11):3205-21. doi: 10.1093/jxb/erw168.
Non coding RNAs, emerging regulators in root endosymbioses. C. Lelandais-Brière, J. Moreau, C. Hartmann and M. Crespi, Molec. Plant Microbe Interactions MPMI, 29(3):170-80. doi: 10.1094/MPMI-10-15-0240-FI.
Detection of Generic Differential RNA Processing Events from RNA-seq Data. Van Du T., Souiai O., Romero-Barrios N., Crespi M. and Gautheret D. (2016) RNA Biology, 13(1):59-67. doi: 10.1080/15476286.2015.1118604.
The chloroplastic DEVH-box helicase ISE2 involved in plasmodesmata regulation is required for group II intron splicing. Carlotto N, Wirth S, Furman N, Ferreyra Solari N, Ariel F, Crespi M, Kobayashi K.Plant Cell Environ. (2016) 39(1):165-73 doi: 10.1111/pce.12603.

2015

Battles and hijacks: noncoding transcription in plants. Ariel F, Romero-Barrios N, Jégu T, Benhamed M, Crespi M.Trends Plant Sci. 2015 Jun;20(6):362-71. doi: 10.1016/j.tplants.2015.03.003
In plants, decapping prevents RDR6-dependent production of small interfering RNAs from endogenous mRNAs. Martínez de Alba AE, Moreno AB, Gabriel M, Mallory AC, Christ A, Bounon R, Balzergue S, Aubourg S, Gautheret D, Crespi MD, Vaucheret H, Maizel A. (2015) Nucleic Acids Res. 2015 Mar 11;43(5):2902-13. doi: 10.1093/nar/gkv119.

2014

Non coding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop.
F. Ariel, T. Jegu, D. Latrasse, N. Romero-Barrios, A. Christ, M. Benhamed and M Crespi (2014) Molecular Cell 55(3):383-96. doi: 10.1016/j.molcel.2014.06.011
Long non-coding RNA modulate alternative splicing regulators in Arabidopsis.
Bardou F, Ariel F, Simpson C, Romero-Barrios N, Laporte P, Balzergue S, Brown J and Crespi M (2014) Developmental Cell 30(2):166-76. doi: 10.1016/j.devcel.2014.06.017
The small RNA diversity from Medicago truncatula roots under biotic interactions evidences the environmental plasticity of the miRNAome.
Formey D, Sallet E, Lelandais-Brière C, Ben C, Bustos-Sanmamed P, Niebel A, Frugier F, Combier J, Debellé F, Hartmann C, Poulain J, Gavory F, Wincker P, Roux C, Gentzbittel L, Gouzy J, Crespi M. (2014) Genome Biol. 15(9):457. doi: 10.1186/s13059-014-0457-4
A Medicago truncatula rdr6 allele impairs transgene silencing and endogenous phased siRNA production but not development.
Bustos-Sanmamed P, Hudik E, Laffont C, Reynes C, Sallet E, Wen J, Mysore KS, Camproux AC, Hartmann C, Gouzy J, Frugier F, Crespi M, Lelandais-Brière C. Plant Biotechnol J. 2014 Jul 24. doi: 10.1111/pbi.12230.
Abiotic stress responses in legumes: Strategies used to cope with environmental challenges
Araújo S. S., Beebe S., Crespi M., Delbreil B., González E. M., Gruber V., Lejeune-Henaut I., Link W., Monteros M. J., Prats E., Rao I., Vadez V., and Vaz Patto M. C. Critical reviews in plant sciences (Legume issue), 2014. doi: 10.1080/07352689.2014.898450
A miR169 isoform regulates specific NF-YA targets and root architecture in Arabidopsis
C. Sorin, M. Declerck, A. Christ, T. Blein, L. Ma, C. Lelandais-Brière, M. F. Njo, T. Beeckman, M. Crespi and C. Hartmann. New Phytol. (2014)202(4):1197-1211. doi: 10.1111/nph.12735
The SWI/SNF chromatin remodelling protein AtBAF60 directly controls the formation of a gene loop at the FLC locus in Arabidopsis
T. Jégu, D. Latrasse, M. Delarue, H. Hirt, S. Domenichini, F. Ariel, M. Crespi, C. Bergounioux, C. Raynaud and M. Benhamed (2014) Plant Cell 26(2):538-51. doi: 10.1105/tpc.113.114454

2013

Multiple functions of KRP5 connect endoreduplication and cell elongation.
Jegu T., Latrasse D., Delarue M., Mazubert C., Bourge M., Hudik E., Blanchet S., Soler M.N., Charon C., Crespi M., De Veylder L., Raynaud C., Bergounioux C., and Benhamed M. (2013) Plant Physiology, 161, 1694. doi: 10.1104/pp.112.212357
Localization in nuclear compartments of a bacterial group II intron-encoded protein in eukaryotic cells is consistent with the evolution of these retroelements to spliceosomal introns
R. Nisa-Martínez, P. Laporte, J. I. Jiménez-Zurdo, F. Frugier, M. Crespi and N. Toro. (2013) PLoS One 8(12):e84056. doi: 10.1371/journal.pone.0084056
miR160 overexpression affects root growth and nitrogen-fixing nodule number in Medicago truncatula
P. Bustos-Sanmamed, G. Mao, Y. Deng, M. Elouet, G. A. Khan, J. Bazin, M. Turner, S. Subramanian, O. Yu, M. Crespi and C. Lelandais-Brière (2013) Functional Plant Biology. 40(12):1208-1220.doi: 10.1071/FP13123.
Small RNA pathways and diversity in model legumes: lessons from genomics
P. Bustos-Sanmamed, J. Bazin, C. Hartmann, M. Crespi, C. Lelandais-Brière (2013) Front Plant Sci. 4:236.doi: 10.3389/fpls.2013.00236.
Independent activity of the homologous small regulatory RNAs AbcR1 and AbcR2 in the legume symbiont Sinorhizobium meliloti.
O. Torres-Quesada, V. Millán, R. Nisa-Martínez, F. Bardou, M. Crespi, N. Toro and J. I. Jiménez-Zurdo 2013, PLOS One 8(7):e68147. doi: 10.1371/journal.pone.0068147.
miR396 affects mycorrhization and root meristem activity in the legume Medicago truncatula
J. Bazin, G. Khan, J.P. Combier, P. Bustos-Sanmamed, J. M. Debernardi, R. Rodriguez, C. Sorin, J. Palatnik, C. Hartmann, M. Crespi and C. Lelandais-Briere 2013, Plant J. 74(6):920-34. doi: 10.1111/tpj.12178
Cytoplasmic and nuclear quality control and turnover of single stranded RNA modulate post-transcriptional gene silencing in plants.
A. Moreno, A. Martínez de Alba, F. Bardou, M. Crespi, H., Vaucheret, A. Maizel, A. Mallory (2013) Nucleic Acids Res., 41(8), 4699-4708. doi: 10.1093/nar/gkt152.
Dual function of MIPS1 as a metabolic enzyme and transcriptional regulator.
D. Latrasse, T. Jégu1, Pin-Hong Meng, C. Mazubert, E. Hudik, M. Delarue, C. Charon, M. Crespi, H. Hirt, C. Raynaud, C. Bergounioux and M. Benhamed, 2013, Nucleic Acids Research, (2013), 41(5), 2907-17. doi: 10.1093/nar/gks1458.
In silico identification and in vivo validation of a set of evolutionary conserved plant root-specific cis-regulatory elements
A. Christ, I. Maegele, N. Ha, H. Ha Nguyen, M. Crespi and A. Maizel, Mechanisms of development, (2013) 130(1):70-81. doi: 10.1016/j.mod.2012.03.002

2012

Selective recruitment of mRNAs and miRNAs to polyribosomes in response to rhizobia infection in Medicago truncatula
M. Reynoso, F. Blanco, J. Bailey-Serres, M. Crespi and M. E. Zanetti (2012) Plant J. 2012 doi: 10.1111/tpj.12033.
Two direct targets of cytokinin signaling control symbiotic nodulation
F. Ariel, M. Brault-Hernandez, C. Laffont, E. Huault, M. Brault, J. Plet, M. Moison, S. Blanchet, J. L. Ichanté, M. Chabaud, S. Carrere, M. Crespi, R. L. Chan and F. Frugier. Plant Cell, 2012, 24(9):3838-52. doi: 10.1105/tpc.112.103267
Cytoplasmic Arabidopsis AGO7 accumulates in membrane-associated siRNA bodies and is required for ta-siRNA biogenesis
V. Jouannet, A. B. Moreno, T. Elmayan, H. Vaucheret, M. Crespi and A. Maizel, EMBO J., 2012, 31(7):1704-13. doi: 10.1038/emboj.2012.20
Comparative transcriptomic analysis of salt adaptation in roots of contrasting Medicago truncatula genotypes
O. Zahaf, S. Blanchet, A. de Zelicourt, B. Alunni, J. Plet, C. Laffont, L. de Lorenzo, S. Imbeaud, J-L. Ichanté, A. Diet, M. Badri, A. Zabalza, E. M. González, H. Delacroix, V. Gruber, F. Frugier and M. Crespi. Molecular Plant 2012; 5(5):1068-81. doi: 10.1093/mp/sss009
Complexity of miRNA-dependent regulation in root symbiosis
J. Bazin, P. Bustos-Sanmameda, C. Hartmann, C. Lelandais-Brièrea and M. Crespi. Philos. Transactions of the Royal Society, 367(1595):1570-9. doi: 10.1098/rstb.2011.0228
Dual implication of a Medicago truncatula NAC transcription factor in root abiotic stress response and symbiotic nodule senescence
A. de Zelicourt, A. Diet, J. Marion, C. Laffont, F. Ariel, M. Moison, Z. Ons, M. Crespi, V. Gruber and F. Frugier. Plant J. (2012), 70(2):220-30. doi: 10.1111/j.1365-313X.2011.04859.x

2011

Dual RNAs in plants
F. Bardou, F. Merchan, F. Ariel and M. Crespi Biochimie (2011) 11:1950-4. doi: 10.1016/j.biochi.2011.07.028
MicroRNAs as regulators of root development and architecture
G. Khan, M. Declerck, C. Sorin, C. Hartmann, M. Crespi and C. Lelandais-Brière. Plant Mol. Biol. (2011) 77: 47-58. doi: 10.1007/s11103-011-9793-x
Transcriptional and posttranscriptional regulation of a NAC1 transcription factor in Medicago truncatula roots
K. D’Haeseleer, G. Den Herder, C. Laffont, J. Plet, V. Mortier, C. Lelandais-Brière, S. De Bodt, A. De Keyser, M. Crespi, M. Holsters, F. Frugier and S. Goormachtig New Phytol (2011)191:647-61. doi: 10.1111/j.1469-8137.2011.03719.x
A novel fry1 allele reveals the existence of a mutant phenotype unrelated to 5’->3’ exoribonuclease (XRN) activities in Arabidopsis thaliana roots
J. Hirsch, J. Misson, P. A. Crisp, P. David, V. Bayle, G. M. Estavillo, H. Javot, S. Chiarenza, A. C. Mallory, A. Maizel, M. Declerck, B. J. Pogson, H. Vaucheret, M. Crespi, T. Desnos, M.C. Thibaud, L. Nussaume and E. Marin PLOS one (2011),6(2):e16724. doi: 10.1371/journal.pone.0016724
MtCRE1-dependent cytokinin signaling integrates bacterial and plant cues to coordinate symbiotic nodule organogenesis in Medicago truncatula
J. Plet, A. Wasson, F. Ariel, C. Le Signor, D. Baker, U. Mathesius, M. Crespi and F. Frugier Plant J. (2011) 65, 622-633. doi: 10.1111/j.1365-313X.2010.04447.x
Regulation of nonsymbiotic and truncated leghemoglobin genes of Lotus japonicus in plants organs and in response to nitric oxide and hormones
Bustos-Sanmamed P., Tovar-Mendeza A., Crespi M., Sato S., Tabata S. and Becana M. New Phytol. (2011) 189(3):765-76. doi: 10.1111/j.1469-8137.2010.03527.x

2010

Environmental regulation of lateral root emergence in Medicago truncatula requires the HD-Zip I transcription factor Mt HB1.
F. Ariel, A. Diet, M. Verdenaud, V. Gruber, F. Frugier, R. Chan and M. Crespi. Plant Cell (2010) 22(7): 2171-83. doi: 10.1105/tpc.110.074823
The LOB-like transcription factor MtLBD1 controls Medicago truncatula root architecture under salt stress
F. D. Ariel, A. Diet, M. Crespi and R. Chan(2010) Plant Signaling and Behaviour, 5:12, 1-3 doi: 10.4161/psb.5.12.14020
Non-protein-coding RNAs and their interacting RNA-binding proteins in the plant cell nucleus
C. Charon, A. B. Moreno, F. Bardou and M. Crespi. Mol Plant (2010) 3: 729-739. doi: 10.1093/mp/ssq037
The Compact Root Architecture 1 gene regulates lignification, flavonoid production and polar auxin transport in Medicago truncatula
C. Laffont, S. Blanchet, C. Lapierre, L. Brocard, P. Ratet, M. Crespi, U. Mathesius and F. Frugier. Plant Physiol. (2010) 153(4):1597-607. doi: 10.1104/pp.110.156620
miR390, TAS3 ta-siRNAs andtheir ARF targets define an auto-regulatory network quantitatively controlling lateral root growth.
V. Jouannet, E. Marin, A. Herz, A.S. Lokerse, D. Weijers, H. Vaucheret, L. Nussaume, M. D. Crespi and A. Maizel. Plant Cell (2010) 22(4):1104-1 doi: 10.1105/tpc.109.072553
A novel RNA-binding peptide regulates the establishment of the Medicago truncatula - Sinorhizobium meliloti nitrogen-fixing symbiosis
P. Laporte, B. Satiat-Jeunemaitre, I. Velasco, T. Csorba, W. Van de Velde, A. Campalans, J. Burgyan, M. Arevalo-Rodriguez and M. Crespi. Plant J. (2010) 62 (1): 24-38. doi: 10.1111/j.1365-313X.2009.04121.x
Cleavage of a non-conserved target by a specific miR156 isoform in root apexes of Medicago truncatula
L. Naya, G. Khan, C. Sorin, C. Hartmann, M. Crespi and C. Lelandais-Brière. Plant Signaling and Behaviour (2010) 5(3):1-4. doi: 10.4161/psb.5.3.11190
Small RNA diversity in plants and its impact in development
C. Lelandais-Brière, C. Sorin, M. Declerck, A. Benslimane, M. Crespi and C. Hartmann, Current Genomics (2010) 11(1), 14-23. doi: 10.2174/138920210790217918.

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