Publications

2023

  •  Lug Trémulot, Catherine Macadré, Joséphine Gal, Marie Garmier, Alexandra Launay-Avon, Christine Paysant-Le Roux, Pascal Ratet,Graham Noctor, Marie Dufresne (2023). Impact of high atmospheric carbon dioxide on the biotic stress response of the model cereal species Brachypodium distachyon. Front. Plant Sci., 16 August 2023 Volume 14 https://doi.org/10.3389/fpls.2023.123705

  • Shengbin Liu; Kévin Magne; Jing Zhou; Juliette Laude; Marion Dalmais; Christine Le Signor; Abdelhafid Bendahmane; Richard Thompson; Jean-Malo Couzigou; Pascal Ratet. The transcriptional co-regulators NBCL1 and NBCL2 redundantly coordinate aerial organ development and root nodule identity in legumes. Journal of Experimental Botany, Volume 74, Issue 1, 1 January 2023, Pages 194–213, https://doi.org/10.1093/jxb/erac389

2022

  • Naeif Matar, Catherine Macadré, Gamal A. G. Ammar, Alexis Peres, Boris Collet, Naim El Boustany, Loïc Rajou, Falah As-Sadi, Marie Dufresne et Pascal Ratet (2022). Identification of beneficial Lebanese Trichoderma wheat endophytes. Front. Plant Sci., 02 December 2022 Volume 13| https://doi.org/10.3389/fpls.2022.1017890
  • Hadou el hadj, D.; Tellah, S.; Goumeida, K.; Aitouakli, S.; Tifest, C.; Ammi, N.; Ratet, P.; Pulvento, C.; Sellami, M.H. (2022) Evaluation of Adaptability of Different Faba Bean Landraces under Mediterranean Field Conditions of Central-Northern Algeria. Agronomy, 12, 1660. https://doi.org/10.3390/agronomy12071660
  • Liu S., Magne K., Daniel S., Sibout R., Ratet R. (2022) Brachypodium distachyon UNICULME4 and LAXATUM-A are redundantly required for development, Plant Physiology, 188(1): 363-381.

2021

  • Gourion B, Ratet P. (2021) Avoidance of detrimental defense responses in beneficial plant-microbe interactions. Curr Opin Biotechnol. 70: 266-272. doi: 10.1016/j.copbio.2021.06.008.
  • Jozefkowicz, C., Gómez, C., Odorizzi, A., Iantcheva, A., Ratet, P., Ayub, N., & Soto, G. (2021). Expanding the Benefits of Tnt1 for the Identification of Dominant Mutations in Polyploid Crops: A Single Allelic Mutation in the MsNAC39 Gene Produces Multifoliated Alfalfa. Frontiers in plant science, 12, 805032. https://doi.org/10.3389/fpls.2021.805032.
  • Changenet V, Macadré C, Boutet-Mercey S, Magne K, Januario M, Dalmais M, Bendahmane A, Mouille G, Dufresne M. (2021) Overexpression of a Cytochrome P450 Monooxygenase Involved in Orobanchol Biosynthesis Increases Susceptibility to Fusarium Head Blight. Front. Plant Sci., 01 April 2021 | https://doi.org/10.3389/fpls.2021.662025.
  • Kadri A, Grenier De March G, Guerineau F, Cosson V, Ratet P. (2021) WUSCHEL overexpression promotes callogenesis and somatic embryogenesis in Medicago truncatula Gaertn. Plants. 10(4):715. https://doi.org/10.3390/plants10040715.

 

2020

  • Benezech C, Berrabah F, Jardinaud MF, Le Scornet A, Milhes M, Jiang G, George J, Ratet P, Vailleau F, Gourion B. (2020) Medicago-Sinorhizobium-Ralstonia Co-infection Reveals Legume Nodules as Pathogen Confined Infection Sites Developing Weak Defenses. Curr Biol. 30(2), 351-358. doi: 10.1016/j.cub.2019.11.066.
  • Magne K, Liu S, Massot S, Dalmais M, Morin H, Sibout R, Bendahmane A, Ratet P. (2020) Roles of BdUNICULME4 and BdLAXATUM-A in the non-domesticated grass Brachypodium distachyon. Plant J. 103(2), 645-659. doi: 10.1111/tpj.14758.
  • Liu S., Ratet P., Magne K. (2020) Nodule diversity, evolution, organogenesis and identity (Chapter 5 ). In: Regulation of nitrogen-fixing symbioses in legumes; Frendo P., Frugier F., Masson-Boivin C. (eds) Adv. Bot. Res. 94 : 119-148. Academic Press London. https://doi.org/10.1016/bs.abr.2019.09.009
  • Sarrocco S, Esteban P, Vicente I, Bernardi R, Plainchamp T, Domenichini S, Puntoni G, Baroncelli R, Vannacci G, Dufresne M. (2020) Straw competition and wheat root endophytism of Trichoderma gamsii T6085 as useful traits in the biocontrol of Fusarium head blight. Phytopathol DOI: 10.1094/phyto-09-20-0441-r.

 

2019

  • Reis A., Magne K., Massot S., Tallini L.R., Scopel M., Bastida J., Ratet P., Zuanazzi J.A.S. (2019b) Amaryllidaceae alkaloids: identification and partial characterization of montanine production in Rhodophiala bifida plants. Scientific Reports 9(1):8471. doi: 10.1038/s41598-019-44746
  • Reis A., Boutet-Mercey S., Massot S., Ratet P., Silveira Zuanazzi J.A. (2019) Isoflavone production in hairy root cultures and plantlets of Trifolium pretense. Biotechnol. Lett, 41(3):427-442. doi: 10.1007/s10529-018-02640-8.
  • Ratet P. (2019) Symbiosis Signaling: Solanaceae Symbiotic LCO Receptors Are Functional for Rhizobium Perception in Legumes. Curr Biol. 29(24):R1312-R1314. doi: 10.1016/j.cub.2019.10.046
  • Maillet F, Fournier J, Mendis HC, Tadege M, Wen J, Ratet P, Mysore KS, Gough C, Jones KM. (2019) Sinorhizobium meliloti succinylated high molecular weight succinoglycan and the Medicago truncatula LysM receptor-like kinase MtLYK10 participate independently in symbiotic infection. Plant J. 102(2):311-326. doi: 10.1111/tpj.14625.
  • Berrabah F., Ratet P., Gourion B. (2019) Legume nodule: massive infection in the absence of defense induction. Mol Plant Microbe Interact. 32(1): 31-44. doi: 10.1094/MPMI-07-18-0205-FI
  • Gatti M., Cambon F., Tassy C.,  Macadré C., Guérard F., Langin T., Dufresne M. (2019). The Brachypodium distachyon UGT Bradi5gUGT03300 confers type II Fusarium Head Blight resistance in wheat. Plant Pathol. 68:334-343. DOI: 101111/ppa.12941
  • Dufresne M., Obert J., Plainchamp T., Besnard O., Seng J.-M. (2019) Méthode de biocontrôle de la fusariose des céréales. Numéro de dépôt : 18 56722.

 

2018

  • Wang J., Andersen S.U., Ratet P. (2018) Editorial: Molecular and Cellular Mechanisms of the Legume-Rhizobia Symbiosis. Front Plant Sci. 9:1839. doi: 10.3389/fpls.2018.01839. eCollection 2018.
  • Berrabah F., Ait Salem E.H., Garmier M., Ratet P. (2018a) The Multiple Faces of the Medicago-Sinorhizobium Symbiosis. In: Cañas L., Beltrán J. (eds) Functional Genomics in Medicago truncatula. Methods in Molecular Biology, vol 1822:241-260. Humana Press, New York, NY.  doi: 10.1007/978-1-4939-8633-0_16.
  • Berrabah F., Balliau T., Aït-Salem E.H., George J., Zivy M., Ratet P., Gourion B. (2018b) Control of the ethylene signaling pathway prevents plant defenses during intracellular accommodation of the rhizobia. New Phytologist 219(1): 310-323.  doi: 10.1111/nph.15142
  • Garmier M., Gentzbittel L., Wen J., Mysore K.S., Ratet P. (2018) Genetic and genomic resources for the study of Medicago truncatula. Current Protocols in Plant Biology2(4): 318-349. doi: 10.1002/cppb.20058.
  • Magne K., Couzigou J.C., Schiessl K., Liu S., George J., Sahl L., Boyer F., Iantcheva A., Mysore K.S., Wen J., Zhukov V., Citerne S., Oldroyd G.E.D., RatetP.(2018a) MtNODULE ROOT1 and MtNODULE ROOT2 are essential for Medicago truncatula indeterminate nodule identity. Plant Physiology 178(1):295-316. doi: 10.1104/pp.18.00610.

  • Magne K., George J., Berbel Tornero A., Broquet B., Madueño F., Andersen S.U., Ratet P. (2018b) Lotus japonicus NOOT-BOP-COCH-LIKE1 is essential for nodule, nectary, leaf and flower development. Plant J. 94(5): 880-894. doi: 10.1111/tpj.13905.
  • Gatti M., Choulet F., Macadré C., Guérard F., Seng J.-M., Langin T., Dufresne M. (2018) Identification, molecular cloning and functional characterization of a wheat UDP-glucosyltransferase involved in deoxynivalenol glucosylation and resistance to Fusarium Head Blight. Frontiers in Plant Sci. 9:1853. doi: 10.3389/fpls.2018.0185

 

2017

  • Domonkos Á., Kovács S., Gombár A., Kiss E., Horváth B., Kováts, G.Z., Farkas A., Tóth M.T., Ayaydin F., Bóka K., Fodor L., Ratet P., Kereszt A., Endre G., Kaló P. (2017) NAD1 controls defense-like responses in Medicago truncatula symbiotic nitrogen fixing nodules following rhizobial colonization in a BacA-independent manner. Genes 8(12) pii: E387. doi: 10.3390/genes8120387
  • Brusamarello-Santos L.C., Gilard F., Brulé L., Quilleré I., Gourion B., Ratet P., Maltempi de Souza E., Lea P.J., Hirel B. (2017) Metabolic profiling of two maize (Zea mays L.) inbred lines inoculated with the nitrogen fixing plant-interacting bacteria Herbaspirillum seropedicae and Azospirillum brasilense. PLoS One 12(3):e0174576. doi: 10.1371/journal.pone.0174576.
  • Genot B., Lang J., Berriri S., Garmier M., Gilard F., Pateyron S., Haustraete K., Van Der Streaten D., Hirt H., Colcombet J. (2017) Constitutively Active Arabidopsis MAP Kinase 3 Triggers Defense Responses Involving Salicylic Acid and SUMM2 Resistance Protein. Plant Physiol. 174(2):1238-1249. doi: 10.1104/pp.17.00378.
  • Kazmierczak T., Nagymihály M., Lamouche F., Barrière Q., Guefrachi I., Alunni B., Ouadghiri M., Ibijbijen J., Kondorosi É., Mergaert P., Gruber V. (2017) Specific host-responsive associations between Medicago truncatula accessions and Sinorhizobium strains. Mol Plant Microbe Interact. 30(5):399-409. doi: 10.1094/MPMI-01-17-0009-R.
  • Nagymihály M., Vásarhely Bálint M., Barrière Q., Chong T.-M., Bálint B., Bihari P., Hong K.-W., Horváth B., Ibijbijen J., Amar M., Farkas A., Kondorosi É., Chan K.G., Gruber V., Ratet P., Mergaert P., Kereszt A.(2017) The complete genome sequence of Ensifer meliloti strain CCMM 1 B554 (FSM-MA), a highly effective nitrogen-fixing microsymbiont of Medicago truncatula Gaertn. Standards in Genomic Sciences 12:75. DOI 10.1186/s40793-017-0298-3.

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2016

  • Chaintreuil C., Rivallan R., Bertioli D.J., Klopp C., Gouzy J., Courtois B., Leleux P., Martin G., Rami J.F., Gully D., Parrinello H., Séverac D., Patrel D., Fardoux J., Ribière W., Boursot M., Cartieaux F., Czernic P., Ratet P., Mournet P., Giraud E., Arrighi J.F. (2016). A gene-based map of the Nod factor-independent Aeschynomene evenia sheds new light on the evolution of nodulation and legume genomes. DNA Res. 23(4):365-376. doi: 10.1093/dnares/dsw020.
  • Couzigou J.M., Magne K., Mondy S., Cosson V., Clements J., Ratet P. (2016). The legume NOOT-BOP-COCH-LIKE genes are conserved regulators of abscission, a major agronomical trait in cultivated crops. New Phytol. 209(1):228-40. doi: 10.1111/nph.13634.
  • Hamoum H., Bouznad A., Mekhaldi A., Ratet P., Djibaoui R. (2016). Free-living diazotrophic rhizobacteria with plant growth promoting traits isolated from the rhizosphere of wheat grown on saline soil in west Algeria. J. Appl. Environ. Biol. Sci. 6(11):1-10.
  • Iantcheva A., Revalska M., Zehirov G., Boycheva I., Magne K., Radkova M., Ratet P., Vassileva V. (2016). Tnt1 retrotransposon as an efficient tool for development of an insertional mutant collection of Lotus japonicus. In Vitro Cellular and Developmental Biology Plant 52 (3):338-47. doi : 10.1007/s11627-016-9768-3.
  • Vialette-Guiraud A.C.M., Chauvet A., Gutierrez-Mazariegos J., Eschstruth A., Ratet P., Scutt C.P. (2016). A conserved role for the NAM/miR164 developmental module reveals a common mechanism underlying carpel margin fusion in monocarpous and syncarpous eurosids. Front. Plant Sci. 6:1239. doi: 10.3389/fpls.2015.01239.
  • Pasquet J-C., Changenet V., Macadré C., Boex-Fontvieille E., Soulhat C., Bouchabké-Coussa O., Dalmais M., Atanasova-Pénichon V., Bendahmane A., Saindrenan P., Dufresne M. (2016). A Brachypodium UDP-glycosyltransferase confers root tolerance to deoxynivalenol and resistance to Fusarium infection. Plant Physiol. 172:559-74. doi:10.1104/pp.16.00371.

 

 2015

  • Araújo S.S., Beebe S., Crespi M., Delbreil B., González E.M., Gruber V., Lejeune-Henaut I., Link W., Monteros M.J., Prats E., Rao I., Vadez V., Vaz Patto M.C. (2015). Abiotic Stress Responses in Legumes: Strategies Used to Cope with Environmental Challenges. Critical Reviews in Plant Sciences 34(1-3): 237-280. DOI: 10.1080/07352689.2014.898450.
  • Berrabah F., Ratet P., Gourion B. (2015). Multiple steps control immunity during the intracellular accommodation of rhizobia. J Exp Bot. 66(7):1977-85. doi: 10.1093/jxb/eru545.
  • Bruggeman Q., Prunier F., Mazubert C., de Bont L., Garmier M., Lugan R., Benhamed M., Bergounioux C., Raynaud C., Delarue M. (2015). Involvement of Arabidopsis Hexokinase1 in Cell Death Mediated by Myo-Inositol Accumulation. Plant Cell 27(6): 1801-14. doi: 10.1105/tpc.15.00068.
  • Cosson V., Eschstruth A., Ratet P. (2015). Medicago truncatula transformation using leaf explants. Methods Mol Biol. 1223:43-56. doi: 10.1007/978-1-4939-1695-5_4.
  • Faure D, et al. 2015. Environmental microbiology as a mosaic of explored ecosystems and issues. Environ. Sci. Pollut. Res. Int. 22:13577-13598. doi: 10.1007/s11356-015-5164-5.
  • Gourion, B., Berrabah, F., Ratet, P., and Stacey, G. (2015). Rhizobium-legume symbioses: the crucial role of plant immunity. Trends Plant Sci. 20:186–194. doi: 10.1016/j.tplants.2014.11.008.
  • Lauressergues D., André O., Peng J., Wen J., Chen R., Ratet P., Tadege M., Mysore K.S., Rochange S.F. (2015). Strigolactones contribute to shoot elongation and to the formation of leaf margin serrations in Medicago truncatula R108. J Exp Bot.  66(5):1237-44. doi: 10.1093/jxb/eru471.
  • Niu L., Lin H., Zhang F., Watira T.W., Li G., Tang Y., Wen J., Ratet P., Mysore K.S., Tadege M. (2015). LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula. Plant J. 81(3): 480-92. doi: 10.1111/tpj.12743.
  • Couzigou J.M., Ratet P. (2015). NOOT-dependent control of nodule identity: nodule homeosis and meristem perturbation. Biological Nitrogen Fixation. F.J. de Bruijn editor., Vol 2, section, chapter 49.
  • Gouache D., Chaouche S., Florin L., Masdoumier G., Barrilliet G., Garcia C., Saillot E., Deswarte J., Valade R., Dufresne M., Seng J-M., Ayral J., Saindrenan P. (2015). MiCODetect : vers le cahier des charges d’un Capteur Optique de Détection présymptomatique de Septoria tritici pour la lutte intégrée contre la septoriose du blé. Innovations Agronomiques, 46:11-26.

  • Pislariu C.I., Sinharoy S., Wen J.Q., Murray J.D., Ratet P., Udvardi M.K., (2015) Retrotransposon (Tnt1)-Insertion Mutagenesis in Medicago as a Tool for Genetic Dissection of Symbiosis in Legumes In: de Bruijn F, ed. Biological nitrogen fixation. Hoboken, NJ, USA: Wiley, 837–854.

 

 2014

  • Berrabah F., Bourcy M., Cayrel A., Eschstruth A., Mondy S., Ratet P., Gourion B. (2014a). Growth Conditions Determine the DNF2 Requirement for Symbiosis. PLoS ONE 9(3): e91866. doi:10.1371/journal.pone.0091866.
  • Berrabah F., Bourcy M., Eschstruth A., Cayrel A., Guefrachi I., Mergaert P., Wen J., Cosson V., Mysore K.S, Gourion B., Ratet P. (2014b). A non-RD receptor-like kinase prevents nodule early senescence and defense-like reactions during symbiosis. New Phytologist, 203(4): 1305-14. doi: 10.1111/nph.12881.
  • Cheng X., Wang M., Lee H.K., Tadege M., Ratet P., Udvardi M., Mysore K.S. Wen J., (2014). An efficient reverse genetics platform in the model legume Medicago truncatula. New Phytologist, 201(3):1065-76. doi: 10.1111/nph.12575.
  • Tadege M., Chen F., Murray J., Wen J.Q., Ratet P., Udvardi M.K., Dixon R.A., Mysore K.S. (2014) Control of vegetative to reproductive phase transition improves biomass yield and simultaneously reduces lignin content in Medicago truncatula. Bioenergy Research 8, 857-867.
  • Guefrachi I., Nagymihaly M., Pislariu C.I., Van de Velde W., Ratet P., Mars M., Udvardi M.K., Kondorosi E., Mergaert P., Alunni B. (2014). Extreme specificity of NCR gene expression in Medicago truncatula. BMC Genomics, 15:712. doi:10.1186/1471-2164-15-712.
  • Hopkins J, Pierre O, Kazmierczak T, Gruber V, Frugier F, Clement M, Frendo P, Herouart D, Boncompagni (2014).  MtZR1, a PRAF protein, is involved in the development of roots and symbiotic root nodules in Medicago truncatula. Plant Cell Environ. 37(3):658-69. doi: 10.1111/pce.12185.
  • Huault E., Laffont C., Wen J., Mysore K.S., Ratet P., Duc G., Frugier F. (2014). Local and systemic regulation of plant root system architecture and symbiotic nodulation by a receptor-like kinase. PLoS Genet. 10(12):e1004891. doi: 10.1371/journal.pgen.1004891.
  • Mondy S., Lenglet A., Beury-Cirou A., Libanga C., Ratet P., Faure D., Dessaux Y. (2014a). An increasing opine carbon bias in artificial exudation systems and genetically modified plant rhizospheres leads to an increasing reshaping of bacterial populations. Molecular Ecology, 23(19):4846-61. doi: 10.1111/mec.12890.
  • Mondy S., Lenglet A., Cosson V., Pelletier S., Pateyron S., Gilard F., Scholte M., Brocard L., Couzigou J.-M., Tcherkez G., Péan M., and Ratet P. (2014b). GOLLUM [FeFe]-hydrogenase-like proteins are essential for plant development in normoxic conditions and modulate energy metabolism. Plant Cell Env. 37(1): 54-69. doi: 10.1111/pce.12128.
  • Wang E., Yu N., Bano S.A., Liu C., Miller A.J., Cousins D., Zhang X., Ratet P., Tadege M., Mysore K.S., Downie J.A., Murray J.D., Oldroyd G.E., Schultze M. (2014). A H+-ATPase that energizes nutrient uptake during mycorrhizal symbioses in rice and Medicago truncatula. Plant Cell. 26(4): 1818-1830.
  • Pasquet J.-C., Balzergue S., Huguet S., Martin-Magniette M.-L., Bellvert F., Deguercy X.*, Thareau V., Macadré C., Heintz D., Saindrenan P. and Dufresne M. (2014) Differential gene expression and metabolomic analyses of Brachypodium distachyon infected by deoxynivalenol producing and non-producing strains of Fusarium graminearum. BMC Genomics 15:629.

 

 2013

  • Bourcy M., Berrabah F., Ratet P., Gourion B. (2013a). Failure of self-control : Defense like reactions during legume/rhizobia symbiosis. Plant Signal Behav. 8(4). doi:pii: e23915.
  • Bourcy M., Brocard L., Pislariu C.I., Cosson V., Mergaert P., Tadege M., Mysore K.S., Udvardi M.K., Gourion B., Ratet P. (2013b). Medicago truncatula DNF2 is a PI-PLC-XD-containing protein required for bacteroid persistence and prevention of nodule early senescence and defense-like reactions. New Phytologist, 197(4), 1250-61.
  • Couzigou JM, Mondy S., Sahl L., Gourion B., Ratet P. (2013). To be or noot to be: evolutionary tinkering for symbiotic organ identity. Plant Signal Behav. 8(8). doi:pii: e24969.
  • Yarce J.C., Lee H.K., Tadege M., Ratet P., Mysore K.S. (2013) Forward genetics screening of Medicago truncatula Tnt1 insertion lines. Methods Mol Biol., 1069:93-100. doi: 10.1007/978-1-62703-613-9_8
  • Gourion B. Bourcy M., Cosson V., Ratet P. (2013) Protocols for growing plant symbioses; rhizobia. In Methods Mol. Biol., 953:61-75.
  • Iantcheva A., Mysore K.S., Ratet P. (2013). Transformation of leguminous plants to study symbiotic interactions. Int. J. Dev. Biol. 57(6-8): 577-586.
  • Jaudal M., Yeoh C.C., Zhang L., Stockum C., Mysore K.S., Ratet P., Putterill J. (2013). Retroelement insertions at the Medicago FTa1 locus in spring mutants eliminate vernalisation but not long day requirements for early flowering. Plant J. 76(4): 580-591 doi: 10.1111/tpj.12315.
  • Yeoh C.C., Balcerowicz M., Zhang L., Jaudal J., Brocard L., Ratet P., Putterill J. (2013). Fine mapping links the FTa1 flowering time regulator to the dominant spring1 locus in Medicago. PLoS One 8(1):e53467. doi: 10.1371/journal.pone.0053467.
  • Schweiger, W., Pasquet J.-C., Wiesenberger G., Kovalski M.P., Torres Acosta J.A., Lemmens M., Macadré C., Budak H., Berthiller F., Nussbaumer T., Mayer K., Saindrenan P. Dufresne M. and Adam G. (2013) Functional characterization of two clusters of Brachypodium distachyon UDP-glycosyltransferases encoding putative deoxynivalenol detoxification genes. Mol. Plant Microbe Interact. 26: 781-792. doi: 10.1094/MPMI-08-12-0205-R.

 

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