Publications des 5 dernières années

·         Gaggion N, Boccardo NA, Bonazzola R, Legascue MF, Mammarella MF, Rodriguez FS, Aballay FE, Catulo FB, Barrios A, Santoro LJ, Accavallo F, Villarreal SN, Pereyra-Bistrain LI, Benhamed M, Crespi M, Ricardi MM, Petrillo E, Blein T, Ariel F, Ferrante E (2026). ChronoRoot 2.0: An Open AI-Powered Platform for 2D Temporal Plant Phenotyping. Gigascience., giag018. doi: 10.1093/gigascience/giag018

·         Traubenik S, Reynoso MA, Sánchez-Rodríguez F, Yacullo M, Christ A, Hummel M, Blein T, Crespi M, Bailey-Serres J, Blanco FA, Zanetti ME (2025). Subunit 3 of the SUPERKILLER complex mediates microRNA172-directed cleavage of Nodule Number Control 1 in Medicago truncatula. Plant Physiol., 199(2):kiaf425. doi: 10.1093/plphys/kiaf425

·         Bazin J, Elvira-Matelot E, Blein T, Jauvion V, Bouteiller N, Cao J, Crespi MD, Vaucheret H (2023). Synergistic action of the Arabidopsis spliceosome components PRP39a and SmD1b in promoting posttranscriptional transgene silencing. Plant Cell., 35(6):1917-1935. doi: 10.1093/plcell/koad091

·         Montessoro P, Paixão JFR, Costa CNM, Ducatti L, Grangeiro LP, Ruivo V, Fusaro AF, Ballesteros HF, Iurif V, Cabral LM, de Andrade JC, Tessaro L, Bernado WP, Coelho FS, de Araújo-Lopes BG, de Almeida Engler J, Bazin J, Campostrini E, Conte-Junior CA, Hemerly AS (2025). The ABAP1 interacting protein 10 (AIP10) exerts a dual role in the cell cycle and primary metabolism pathways in Arabidopsis thaliana. Plant J. ;123(3):e70399. doi: 10.1111/tpj.70399. Erratum in: Plant J. 2025 124(2):e70508. doi: 10.1111/tpj.70508.

·         Mammi P, Blein T (2025). From non-coding to chromatin regulators: VIVIpary and the rise of lncRNAs in plant biology. Mol Plant., 18(8):1259-1261. doi: 10.1016/j.molp.2025.06.011

·         Elmayan T, Blein T, Elvira-Matelot E, Le Masson I, Christ A, Bouteiller N, Crespi MD, Vaucheret H (2025). Arabidopsis SGS3 is recruited to chromatin by CHR11 to select RNA that initiate siRNA production. Nat Commun., 16(1):2978. doi: 10.1038/s41467-025-57394-5

·         Barrios A, Gaggion N, Mansilla N, Blein T, Sorin C, Lucero L, Ferrante E, Crespi M, Ariel F (2025). The transcription factor NF-YA10 determines the area explored by Arabidopsis thaliana roots and directly regulates LAZY genes. Plant J., 121(5):e70016. doi: 10.1111/tpj.70016

·         Argirò L, Laffont C, Moreau C, Moreau C, Su Y, Pervent M, Parrinello H, Blein T, Kohlen W, Lepetit M, Frugier F (2024). The Compact Root Architecture 2 systemic pathway is required for the repression of cytokinins and miR399 accumulation in Medicago truncatula N-limited plants. J Exp Bot., 75(18):5667-5680. doi: 10.1093/jxb/erae281

·         Soulé S, Huang K, Mulet K, Mejias J, Bazin J, Truong NM, Kika JL, Jaubert S, Abad P, Zhao J, Favery B, Quentin M (2024). The root-knot nematode effector MiEFF12 targets the host ER quality control system to suppress immune responses and allow parasitism. Mol Plant Pathol., 25(7):e13491. doi: 10.1111/mpp.13491

·         Traubenik S, Charon C, Blein T (2024). From environmental responses to adaptation: the roles of plant lncRNAs. Plant Physiol., 195(1):232-244. doi: 10.1093/plphys/kiae034

·         Siodmak A, Martinez-Seidel F, Rayapuram N, Bazin J, Alhoraibi H, Gentry-Torfer D, Tabassum N, Sheikh AH, Kise JKG, Blilou I, Crespi M, Kopka J, Hirt H (2023). Dynamics of ribosome composition and ribosomal protein phosphorylation in immune signaling in Arabidopsis thaliana. Nucleic Acids Res., 51(21):11876-11892. doi: 10.1093/nar/gkad827

·         Liu L, Heidecker M, Depuydt T, Manosalva Perez N, Crespi M, Blein T, Vandepoele K (2023). Transcription factors KANADI 1, MYB DOMAIN PROTEIN 44, and PHYTOCHROME INTERACTING FACTOR 4 regulate long intergenic noncoding RNAs expressed in Arabidopsis roots. Plant Physiol., 193(3):1933-1953. doi: 10.1093/plphys/kiad360

·         Prall W, Sheikh AH, Bazin J, Bigeard J, Almeida-Trapp M, Crespi M, Hirt H, Gregory BD (2023). Pathogen-induced m6A dynamics affect plant immunity. Plant Cell., 35(11):4155-4172. doi: 10.1093/plcell/koad224

·         Roulé T, Legascue MF, Barrios A, Gaggion N, Crespi M, Ariel F, Blein T (2023). The long intergenic noncoding RNA ARES modulates root architecture in Arabidopsis. IUBMB Life. 75(10):880-892. doi: 10.1002/iub.2761

·         Huang Y, An J, Sircar S, Bergis C, Lopes CD, He X, Da Costa B, Tan FQ, Bazin J, Antunez-Sanchez J, Mammarella MF, Devani RS, Brik-Chaouche R, Bendahmane A, Frugier F, Xia C, Rothan C, Probst AV, Mohamed Z, Bergounioux C, Delarue M, Zhang Y, Zheng S, Crespi M, Fragkostefanakis S, Mahfouz MM, Ariel F, Gutierrez-Marcos J, Raynaud C, Latrasse D, Benhamed M (2023). HSFA1a modulates plant heat stress responses and alters the 3D chromatin organization of enhancer-promoter interactions. Nat Commun., 14(1):469. doi: 10.1038/s41467-023-36227-3

·         Fonouni-Farde C, Christ A, Blein T, Legascue MF, Ferrero L, Moison M, Lucero L, Ramírez-Prado JS, Latrasse D, Gonzalez D, Benhamed M, Quadrana L, Crespi M, Ariel F (2022). The Arabidopsis APOLO and human UPAT sequence-unrelated long noncoding RNAs can modulate DNA and histone methylation machineries in plants. Genome Biol., 23(1):181. doi: 10.1186/s13059-022-02750-7

·         Butt H, Bazin J, Prasad KVSK, Awad N, Crespi M, Reddy ASN, Mahfouz MM (2022). The Rice Serine/Arginine Splicing Factor RS33 Regulates Pre-mRNA Splicing during Abiotic Stress Responses. Cells., 11(11):1796. doi: 10.3390/cells11111796

·         Mejias J, Chen Y, Bazin J, Truong NM, Mulet K, Noureddine Y, Jaubert-Possamai S, Ranty-Roby S, Soulé S, Abad P, Crespi MD, Favery B, Quentin M (2022). Silencing the conserved small nuclear ribonucleoprotein SmD1 target gene alters susceptibility to root-knot nematodes in plants. Plant Physiol., 189(3):1741-1756. doi: 10.1093/plphys/kiac155

·         Roulé T, Christ A, Hussain N, Huang Y, Hartmann C, Benhamed M, Gutierrez-Marcos J, Ariel F, Crespi M, Blein T (2022). The lncRNA MARS modulates the epigenetic reprogramming of the marneral cluster in response to ABA. Mol Plant., 15(5):840-856. doi: 10.1016/j.molp.2022.02.007

·         Roulé T, Crespi M, Blein T. Regulatory long non-coding RNAs in root growth and development (2022). Biochem Soc Trans., 50(1):403-412. doi: 10.1042/bst20210743

·         Guilcher M, Liehrmann A, Seyman C, Blein T, Rigaill G, Castandet B, Delannoy E (2021). Full Length Transcriptome Highlights the Coordination of Plastid Transcript Processing. Int J Mol Sci., 22(20):11297. doi: 10.3390/ijms222011297

·         Gaggion N, Ariel F, Daric V, Lambert É, Legendre S, Roulé T, Camoirano A, Milone DH, Crespi M, Blein T, Ferrante E (2021). ChronoRoot: High-throughput phenotyping by deep segmentation networks reveals novel temporal parameters of plant root system architecture. Gigascience., 10(7):giab052. doi: 10.1093/gigascience/giab052

·         Moison M, Pacheco JM, Lucero L, Fonouni-Farde C, Rodríguez-Melo J, Mansilla N, Christ A, Bazin J, Benhamed M, Ibañez F, Crespi M, Estevez JM, Ariel F (2021). The lncRNA APOLO interacts with the transcription factor WRKY42 to trigger root hair cell expansion in response to cold. Mol Plant. 14(6):937-948. doi: 10.1016/j.molp.2021.03.008

·         Butt H, Bazin J, Alshareef S, Eid A, Benhamed M, Reddy ASN, Crespi M, Mahfouz MM (2021). Overlapping roles of spliceosomal components SF3B1 and PHF5A in rice splicing regulation. Commun Biol. 4(1):529. doi: 10.1038/s42003-021-02051-y

·         Chialva C, Blein T, Crespi M, Lijavetzky D (2021). Insights into long non-coding RNA regulation of anthocyanin carrot root pigmentation. Sci Rep., 11(1):4093. doi: 10.1038/s41598-021-83514-4

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